Strain Fitness in Agrobacterium fabrum C58 around Atu5029

Experiment: Chloramphenicol 12.5 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5027 and Atu5028 overlap by 4 nucleotidesAtu5028 and Atu5029 are separated by 170 nucleotidesAtu5029 and Atu5030 are separated by 160 nucleotidesAtu5030 and Atu5031 are separated by 60 nucleotides Atu5027: Atu5027 - IS 426 transposase, at 28,825 to 29,379 Atu5027 Atu5028: Atu5028 - IS426 transposase, at 29,376 to 29,753 Atu5028 Atu5029: Atu5029 - hypothetical protein, at 29,924 to 30,694 Atu5029 Atu5030: Atu5030 - hypothetical protein, at 30,855 to 31,397 Atu5030 Atu5031: Atu5031 - hypothetical protein, at 31,458 to 32,576 Atu5031 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 28.999 kb on - strand, within Atu5027at 29.022 kb on + strand, within Atu5027at 29.023 kb on + strand, within Atu5027at 29.030 kb on - strand, within Atu5027at 29.044 kb on + strand, within Atu5027at 29.044 kb on + strand, within Atu5027at 29.052 kb on - strand, within Atu5027at 29.052 kb on - strand, within Atu5027at 29.056 kb on + strand, within Atu5027at 29.063 kb on + strand, within Atu5027at 29.063 kb on + strand, within Atu5027at 29.071 kb on - strand, within Atu5027at 29.071 kb on - strand, within Atu5027at 29.078 kb on - strand, within Atu5027at 29.105 kb on + strand, within Atu5027at 29.108 kb on - strand, within Atu5027at 29.110 kb on - strand, within Atu5027at 29.124 kb on - strand, within Atu5027at 29.166 kb on + strand, within Atu5027at 29.167 kb on - strand, within Atu5027at 29.172 kb on - strand, within Atu5027at 29.180 kb on - strand, within Atu5027at 29.180 kb on - strand, within Atu5027at 29.190 kb on - strand, within Atu5027at 29.203 kb on - strand, within Atu5027at 29.203 kb on - strand, within Atu5027at 29.205 kb on - strand, within Atu5027at 29.360 kb on - strandat 29.441 kb on - strand, within Atu5028at 29.629 kb on + strand, within Atu5028at 29.697 kb on - strand, within Atu5028at 29.697 kb on - strand, within Atu5028at 29.697 kb on - strand, within Atu5028at 29.697 kb on - strand, within Atu5028at 29.750 kb on + strandat 29.756 kb on + strandat 29.762 kb on + strandat 29.762 kb on + strandat 29.762 kb on + strandat 29.762 kb on + strandat 29.764 kb on - strandat 29.770 kb on - strandat 29.770 kb on - strandat 29.780 kb on - strandat 29.846 kb on - strandat 29.923 kb on - strandat 29.938 kb on + strandat 29.983 kb on - strandat 30.003 kb on - strand, within Atu5029at 30.074 kb on + strand, within Atu5029at 30.089 kb on - strand, within Atu5029at 30.089 kb on - strand, within Atu5029at 30.094 kb on - strand, within Atu5029at 30.128 kb on + strand, within Atu5029at 30.183 kb on - strand, within Atu5029at 30.206 kb on - strand, within Atu5029at 30.208 kb on + strand, within Atu5029at 30.268 kb on + strand, within Atu5029at 30.276 kb on - strand, within Atu5029at 30.276 kb on - strand, within Atu5029at 30.294 kb on + strand, within Atu5029at 30.321 kb on - strand, within Atu5029at 30.338 kb on - strand, within Atu5029at 30.347 kb on - strand, within Atu5029at 30.416 kb on + strand, within Atu5029at 30.562 kb on - strand, within Atu5029at 30.581 kb on + strand, within Atu5029at 30.644 kb on - strandat 30.706 kb on - strandat 30.706 kb on - strandat 30.725 kb on + strandat 30.760 kb on - strandat 30.762 kb on + strandat 30.853 kb on + strandat 31.006 kb on + strand, within Atu5030at 31.006 kb on + strand, within Atu5030at 31.006 kb on + strand, within Atu5030at 31.016 kb on + strand, within Atu5030at 31.016 kb on + strand, within Atu5030at 31.019 kb on - strand, within Atu5030at 31.027 kb on + strand, within Atu5030at 31.050 kb on + strand, within Atu5030at 31.064 kb on + strand, within Atu5030at 31.076 kb on + strand, within Atu5030at 31.084 kb on - strand, within Atu5030at 31.132 kb on + strand, within Atu5030at 31.133 kb on - strand, within Atu5030at 31.191 kb on - strand, within Atu5030at 31.193 kb on + strand, within Atu5030at 31.201 kb on - strand, within Atu5030at 31.214 kb on - strand, within Atu5030at 31.233 kb on - strand, within Atu5030at 31.238 kb on - strand, within Atu5030at 31.266 kb on + strand, within Atu5030at 31.321 kb on + strand, within Atu5030at 31.356 kb on + strandat 31.371 kb on + strandat 31.402 kb on - strandat 31.617 kb on + strand, within Atu5031at 31.624 kb on - strand, within Atu5031at 31.632 kb on - strand, within Atu5031at 31.632 kb on - strand, within Atu5031at 31.646 kb on - strand, within Atu5031

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL
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28,999 - Atu5027 0.31 +0.8
29,022 + Atu5027 0.35 +1.8
29,023 + Atu5027 0.36 +0.7
29,030 - Atu5027 0.37 +0.6
29,044 + Atu5027 0.39 -0.5
29,044 + Atu5027 0.39 -1.5
29,052 - Atu5027 0.41 -0.2
29,052 - Atu5027 0.41 -1.4
29,056 + Atu5027 0.42 -1.2
29,063 + Atu5027 0.43 -1.2
29,063 + Atu5027 0.43 -0.9
29,071 - Atu5027 0.44 -0.1
29,071 - Atu5027 0.44 -0.1
29,078 - Atu5027 0.46 -2.1
29,105 + Atu5027 0.50 -1.0
29,108 - Atu5027 0.51 -1.4
29,110 - Atu5027 0.51 -1.4
29,124 - Atu5027 0.54 +1.0
29,166 + Atu5027 0.61 +0.5
29,167 - Atu5027 0.62 -2.3
29,172 - Atu5027 0.63 -0.4
29,180 - Atu5027 0.64 -1.0
29,180 - Atu5027 0.64 +2.0
29,190 - Atu5027 0.66 -2.0
29,203 - Atu5027 0.68 -1.0
29,203 - Atu5027 0.68 +0.1
29,205 - Atu5027 0.68 -0.2
29,360 - -0.7
29,441 - Atu5028 0.17 -0.4
29,629 + Atu5028 0.67 -1.4
29,697 - Atu5028 0.85 +0.5
29,697 - Atu5028 0.85 -0.1
29,697 - Atu5028 0.85 -0.4
29,697 - Atu5028 0.85 -0.7
29,750 + +0.1
29,756 + -1.5
29,762 + -2.4
29,762 + -1.0
29,762 + -1.9
29,762 + +0.6
29,764 - +1.4
29,770 - +0.4
29,770 - -1.9
29,780 - +1.6
29,846 - -0.6
29,923 - -1.0
29,938 + -1.2
29,983 - -0.7
30,003 - Atu5029 0.10 +0.5
30,074 + Atu5029 0.19 -0.7
30,089 - Atu5029 0.21 -0.7
30,089 - Atu5029 0.21 -1.7
30,094 - Atu5029 0.22 +0.3
30,128 + Atu5029 0.26 +0.0
30,183 - Atu5029 0.34 -0.2
30,206 - Atu5029 0.37 -1.0
30,208 + Atu5029 0.37 -0.3
30,268 + Atu5029 0.45 -1.3
30,276 - Atu5029 0.46 +0.9
30,276 - Atu5029 0.46 -0.7
30,294 + Atu5029 0.48 -0.3
30,321 - Atu5029 0.51 -2.9
30,338 - Atu5029 0.54 -0.2
30,347 - Atu5029 0.55 +4.2
30,416 + Atu5029 0.64 -1.9
30,562 - Atu5029 0.83 -1.0
30,581 + Atu5029 0.85 -2.0
30,644 - -0.4
30,706 - -0.3
30,706 - -1.3
30,725 + -0.0
30,760 - +0.0
30,762 + -2.1
30,853 + -0.6
31,006 + Atu5030 0.28 -1.0
31,006 + Atu5030 0.28 -0.6
31,006 + Atu5030 0.28 -0.6
31,016 + Atu5030 0.30 +0.7
31,016 + Atu5030 0.30 -1.2
31,019 - Atu5030 0.30 -0.7
31,027 + Atu5030 0.32 +0.5
31,050 + Atu5030 0.36 +0.1
31,064 + Atu5030 0.38 -2.2
31,076 + Atu5030 0.41 -1.2
31,084 - Atu5030 0.42 +0.6
31,132 + Atu5030 0.51 -0.6
31,133 - Atu5030 0.51 -0.7
31,191 - Atu5030 0.62 +0.6
31,193 + Atu5030 0.62 -1.0
31,201 - Atu5030 0.64 +2.9
31,214 - Atu5030 0.66 -1.2
31,233 - Atu5030 0.70 +1.3
31,238 - Atu5030 0.71 +0.4
31,266 + Atu5030 0.76 -0.0
31,321 + Atu5030 0.86 -0.4
31,356 + -0.4
31,371 + -1.4
31,402 - -0.7
31,617 + Atu5031 0.14 -1.4
31,624 - Atu5031 0.15 +0.4
31,632 - Atu5031 0.16 +1.2
31,632 - Atu5031 0.16 -0.4
31,646 - Atu5031 0.17 +1.7

Or see this region's nucleotide sequence