Strain Fitness in Agrobacterium fabrum C58 around Atu4729

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
1,892,379	+		Atu4728	0.56	-0.8
1,892,387	-		Atu4728	0.56	+1.7
1,892,420	+		Atu4728	0.58	+0.4
1,892,497	+		Atu4728	0.62	+0.0
1,892,497	+		Atu4728	0.62	-0.7
1,892,505	-		Atu4728	0.63	+0.2
1,892,528	-		Atu4728	0.64	+0.1
1,892,591	+		Atu4728	0.68	+0.6
1,892,591	+		Atu4728	0.68	-0.3
1,892,626	-		Atu4728	0.70	-0.1
1,892,677	+		Atu4728	0.72	-1.2
1,892,702	+		Atu4728	0.74	-1.2
1,892,784	-		Atu4728	0.78	-0.3
1,892,813	-		Atu4728	0.80	-0.1
1,892,813	-		Atu4728	0.80	+0.1
1,892,841	-		Atu4728	0.82	+0.3
1,892,843	+		Atu4728	0.82	+1.0
1,892,909	-		Atu4728	0.85	+3.3
1,892,952	-		Atu4728	0.88	+0.6
1,893,009	-				+0.5
1,893,067	+				-0.5
1,893,093	-				-1.0
1,893,104	+				+1.6
1,893,142	+				+0.9
1,893,155	-				+0.8
1,893,217	+				-0.5
1,893,253	+				+0.1
1,893,344	+				-0.8
1,893,344	+				+0.5
1,893,344	+				+1.6
1,893,345	+				-1.1
1,893,353	-				+0.1
1,893,364	+				+1.9
1,893,389	+				-1.9
1,893,498	-				-1.8
1,893,540	-		Atu4729	0.12	-1.0
1,893,616	-		Atu4729	0.16	-0.5
1,893,730	-		Atu4729	0.23	-0.7
1,893,730	-		Atu4729	0.23	-1.4
1,893,747	-		Atu4729	0.25	-0.3
1,893,754	-		Atu4729	0.25	+0.6
1,893,767	+		Atu4729	0.26	+0.2
1,893,790	+		Atu4729	0.27	-0.3
1,893,790	+		Atu4729	0.27	-0.3
1,893,809	+		Atu4729	0.28	-0.5
1,893,809	+		Atu4729	0.28	-1.1
1,893,817	-		Atu4729	0.29	+1.9
1,893,817	-		Atu4729	0.29	+0.9
1,893,817	-		Atu4729	0.29	-1.3
1,893,817	-		Atu4729	0.29	+0.0
1,893,934	+		Atu4729	0.36	-0.6
1,893,945	+		Atu4729	0.37	-0.3
1,894,048	+		Atu4729	0.43	-1.2
1,894,048	+		Atu4729	0.43	-0.0
1,894,053	+		Atu4729	0.44	+1.9
1,894,145	-		Atu4729	0.49	-1.2
1,894,148	-		Atu4729	0.50	-0.9
1,894,197	+		Atu4729	0.53	-0.1
1,894,203	-		Atu4729	0.53	+1.3
1,894,231	+		Atu4729	0.55	+0.3
1,894,250	+		Atu4729	0.56	-0.3
1,894,318	-		Atu4729	0.60	+0.2
1,894,339	-		Atu4729	0.61	+0.4
1,894,409	+		Atu4729	0.66	-0.7
1,894,566	+		Atu4729	0.76	-0.1
1,894,709	+		Atu4729	0.85	-0.2
1,894,709	+		Atu4729	0.85	+1.9
1,894,709	+		Atu4729	0.85	-2.8
1,894,847	-				-0.1
1,894,947	+				-0.6
1,894,955	-				-0.2
1,894,998	+				+0.1
1,895,006	-				+1.3
1,895,006	-				+0.0
1,895,153	-		Atu4730	0.21	+2.3
1,895,205	+		Atu4730	0.27	-0.4
1,895,215	-		Atu4730	0.28	+0.6
1,895,223	-		Atu4730	0.29	+0.3
1,895,236	-		Atu4730	0.30	+1.2
1,895,262	+		Atu4730	0.33	-2.8
1,895,361	-		Atu4730	0.43	-1.1
1,895,368	-		Atu4730	0.44	+0.2
1,895,454	-		Atu4730	0.53	-0.6
1,895,454	-		Atu4730	0.53	-0.4
1,895,454	-		Atu4730	0.53	+0.1
1,895,478	+		Atu4730	0.56	-0.1
1,895,489	+		Atu4730	0.57	-0.6
1,895,569	+		Atu4730	0.65	+0.1
1,895,636	+		Atu4730	0.72	+0.9
1,895,636	+		Atu4730	0.72	-1.3
1,895,644	-		Atu4730	0.73	-0.6
1,895,767	+		Atu4730	0.86	+0.6
1,895,770	-		Atu4730	0.86	-0.1
1,895,885	+				+0.6
1,895,885	+				-0.8
1,895,885	+				-0.3
1,895,893	-				+0.0
1,895,934	+				+1.9