Strain Fitness in Agrobacterium fabrum C58 around Atu4622

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
1,768,843	-				-1.1
1,768,891	+				+0.8
1,768,894	-				-3.0
1,768,908	-				-2.9
1,768,918	+				+0.8
1,768,926	-				+0.1
1,768,940	+				+1.1
1,768,940	+				-0.4
1,768,948	-				-0.2
1,768,948	-				+0.8
1,768,965	+				+2.5
1,768,973	-				-0.0
1,769,156	-		Atu4621	0.29	-1.2
1,769,206	+		Atu4621	0.35	+1.3
1,769,240	-		Atu4621	0.39	-0.1
1,769,250	-		Atu4621	0.41	+0.2
1,769,266	+		Atu4621	0.42	-1.0
1,769,269	-		Atu4621	0.43	-0.2
1,769,272	-		Atu4621	0.43	+1.2
1,769,274	-		Atu4621	0.43	-0.0
1,769,274	-		Atu4621	0.43	+0.8
1,769,274	-		Atu4621	0.43	+0.8
1,769,274	-		Atu4621	0.43	-0.4
1,769,282	+		Atu4621	0.44	-1.3
1,769,287	+		Atu4621	0.45	-0.2
1,769,287	+		Atu4621	0.45	+1.0
1,769,300	-		Atu4621	0.46	+0.6
1,769,300	-		Atu4621	0.46	+0.7
1,769,320	-		Atu4621	0.49	+0.5
1,769,373	+		Atu4621	0.55	-0.2
1,769,381	-		Atu4621	0.56	+1.8
1,769,381	-		Atu4621	0.56	+0.5
1,769,381	-		Atu4621	0.56	-0.1
1,769,403	+		Atu4621	0.59	-0.0
1,769,457	+		Atu4621	0.65	-0.8
1,769,470	-		Atu4621	0.67	-0.3
1,769,711	+				+0.7
1,769,725	+				-1.3
1,769,733	-				+0.7
1,769,742	+				-0.7
1,769,759	+				-0.8
1,769,793	+				+0.2
1,769,801	-				+0.4
1,769,824	-				-1.4
1,769,939	+		Atu4622	0.22	-1.6
1,769,946	+		Atu4622	0.23	+0.2
1,769,962	+		Atu4622	0.25	-1.2
1,769,975	-		Atu4622	0.26	+0.4
1,769,988	+		Atu4622	0.28	-0.5
1,770,003	+		Atu4622	0.29	-0.1
1,770,084	-		Atu4622	0.38	+0.2
1,770,216	+		Atu4622	0.53	-0.8
1,770,224	-		Atu4622	0.54	-2.7
1,770,224	-		Atu4622	0.54	-0.5
1,770,229	-		Atu4622	0.54	-1.4
1,770,240	+		Atu4622	0.56	+0.5
1,770,248	-		Atu4622	0.57	-0.5
1,770,250	+		Atu4622	0.57	+0.9
1,770,305	+		Atu4622	0.63	-0.7
1,770,344	-		Atu4622	0.67	-0.1
1,770,350	-		Atu4622	0.68	+0.8
1,770,402	+		Atu4622	0.74	-0.4
1,770,405	-		Atu4622	0.74	+2.8
1,770,410	-		Atu4622	0.75	+0.5
1,770,558	-				+0.4
1,770,558	-				+0.2
1,770,621	-				+0.3
1,770,621	-				-1.0
1,770,680	-				+0.8
1,770,774	+		Atu4623	0.14	+0.4
1,770,774	+		Atu4623	0.14	-0.2
1,770,779	+		Atu4623	0.14	-0.7
1,770,782	-		Atu4623	0.14	+0.8
1,770,782	-		Atu4623	0.14	+0.5
1,770,782	-		Atu4623	0.14	+0.8
1,770,782	-		Atu4623	0.14	-1.5
1,770,782	-		Atu4623	0.14	+0.4
1,770,782	-		Atu4623	0.14	-2.1
1,770,789	+		Atu4623	0.15	-0.7
1,770,808	-		Atu4623	0.17	-0.2
1,770,836	-		Atu4623	0.20	-0.6
1,770,843	+		Atu4623	0.20	+0.7
1,770,864	+		Atu4623	0.22	+0.8
1,770,892	-		Atu4623	0.25	+1.2
1,770,921	+		Atu4623	0.28	-0.2
1,770,935	-		Atu4623	0.29	-0.2
1,770,935	-		Atu4623	0.29	-1.1
1,770,961	-		Atu4623	0.32	-0.3
1,770,975	-		Atu4623	0.33	+0.4
1,770,988	-		Atu4623	0.34	+0.0
1,770,994	+		Atu4623	0.35	-0.1
1,770,999	+		Atu4623	0.35	+0.9
1,770,999	+		Atu4623	0.35	+0.8
1,771,007	-		Atu4623	0.36	+1.0
1,771,019	+		Atu4623	0.37	+0.2
1,771,044	+		Atu4623	0.40	-0.7
1,771,090	+		Atu4623	0.44	-0.4
1,771,171	+		Atu4623	0.52	+0.2
1,771,172	+		Atu4623	0.52	-1.4
1,771,178	-		Atu4623	0.53	+0.6
1,771,243	+		Atu4623	0.59	+0.2
1,771,243	+		Atu4623	0.59	+0.3
1,771,251	-		Atu4623	0.60	-1.2
1,771,359	-		Atu4623	0.70	-0.4
1,771,365	+		Atu4623	0.71	+0.2
1,771,379	-		Atu4623	0.72	-0.8
1,771,379	-		Atu4623	0.72	+0.6
1,771,497	-		Atu4623	0.84	+0.3
1,771,587	+				-1.2
1,771,587	+				+1.0
1,771,590	-				-1.0
1,771,597	+				+0.2
1,771,604	-				-0.0
1,771,605	-				+1.8
1,771,605	-				-0.3
1,771,619	-				+0.9
1,771,628	+				+0.8