Strain Fitness in Agrobacterium fabrum C58 around Atu4540

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
1,685,601	+		Atu4538	0.79	-0.1
1,685,687	+		Atu4538	0.87	-0.4
1,685,689	-		Atu4538	0.88	-1.0
1,685,727	-				-2.1
1,685,744	+				-1.8
1,685,752	-				-0.6
1,685,760	-				+0.2
1,685,781	+				-0.9
1,685,789	-				+0.1
1,685,893	-				-0.0
1,685,912	+		Atu4539	0.13	-0.1
1,685,958	-		Atu4539	0.20	+0.6
1,685,984	+		Atu4539	0.24	-1.9
1,686,012	-		Atu4539	0.29	-0.6
1,686,014	-		Atu4539	0.29	-1.6
1,686,055	-		Atu4539	0.36	-0.4
1,686,092	-		Atu4539	0.42	+0.5
1,686,238	-		Atu4539	0.65	-0.7
1,686,247	+		Atu4539	0.67	+1.8
1,686,268	+		Atu4539	0.70	+0.7
1,686,268	+		Atu4539	0.70	-0.0
1,686,268	+		Atu4539	0.70	+0.3
1,686,268	+		Atu4539	0.70	-1.0
1,686,276	-		Atu4539	0.71	-0.5
1,686,276	-		Atu4539	0.71	-1.2
1,686,276	-		Atu4539	0.71	+0.8
1,686,276	-		Atu4539	0.71	+0.5
1,686,276	-		Atu4539	0.71	-1.9
1,686,452	-				+2.9
1,686,485	+				-0.2
1,686,511	+				-1.0
1,686,543	-		Atu4540	0.12	-1.4
1,686,543	-		Atu4540	0.12	-1.7
1,686,558	-		Atu4540	0.14	+0.6
1,686,630	-		Atu4540	0.23	-0.8
1,687,003	-		Atu4540	0.74	-2.2
1,687,134	-				-1.1
1,687,311	+		Atu4541	0.27	+0.8
1,687,319	+		Atu4541	0.29	-1.6
1,687,327	-		Atu4541	0.31	-1.0
1,687,356	+		Atu4541	0.37	+1.8
1,687,377	+		Atu4541	0.42	-0.3
1,687,385	-		Atu4541	0.44	+0.2
1,687,559	+		Atu4541	0.84	+2.4
1,687,581	+		Atu4541	0.89	-0.2
1,687,581	+		Atu4541	0.89	-0.9
1,687,669	+				+0.8
1,687,687	-				+0.1
1,687,690	+				-1.4
1,687,690	+				+0.4
1,687,715	+		Atu4542	0.11	+0.7
1,687,780	+		Atu4542	0.19	-2.0
1,687,830	+		Atu4542	0.25	-0.1
1,687,848	-		Atu4542	0.27	+1.8
1,687,948	+		Atu4542	0.40	-2.5
1,687,956	-		Atu4542	0.41	+0.0
1,687,956	-		Atu4542	0.41	+0.4
1,687,956	-		Atu4542	0.41	+0.2
1,687,991	-		Atu4542	0.45	+0.7
1,688,039	+		Atu4542	0.51	+0.2
1,688,094	+		Atu4542	0.58	-1.2