Strain Fitness in Agrobacterium fabrum C58 around Atu4116

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
1,234,632	-				-1.9
1,234,669	-				+0.9
1,234,669	-				-1.4
1,234,740	+				-2.4
1,234,880	+		Atu4115	0.20	-2.5
1,234,920	+		Atu4115	0.25	-0.1
1,234,995	+		Atu4115	0.33	-0.4
1,235,042	+		Atu4115	0.38	-1.4
1,235,258	-		Atu4115	0.62	+2.2
1,235,287	-		Atu4115	0.65	-2.5
1,235,324	+		Atu4115	0.69	-1.1
1,235,332	-		Atu4115	0.70	+0.1
1,235,347	+		Atu4115	0.71	-0.4
1,235,355	-		Atu4115	0.72	-0.5
1,235,431	+		Atu4115	0.80	-1.0
1,235,505	+		Atu4115	0.89	-1.4
1,235,566	-				-1.4
1,235,677	-				-1.7
1,235,723	-		Atu4116	0.13	-2.8
1,235,733	-		Atu4116	0.14	-2.2
1,235,733	-		Atu4116	0.14	+0.0
1,235,762	-		Atu4116	0.18	-0.3
1,235,866	+		Atu4116	0.30	-1.6
1,235,893	+		Atu4116	0.33	+0.5
1,235,922	-		Atu4116	0.37	+0.3
1,235,970	-		Atu4116	0.42	-1.0
1,236,009	+		Atu4116	0.47	+0.5
1,236,014	+		Atu4116	0.48	-1.6
1,236,014	+		Atu4116	0.48	-1.9
1,236,058	-		Atu4116	0.53	-0.9
1,236,084	-		Atu4116	0.56	-0.4
1,236,094	-		Atu4116	0.57	-0.7
1,236,301	-		Atu4116	0.82	-1.5
1,236,324	+		Atu4116	0.85	-1.5
1,236,371	+				-1.4
1,236,371	+				-2.7
1,236,371	+				+4.5
1,236,379	-				+1.9
1,236,475	-				-1.9
1,236,503	+				-1.0
1,236,533	+				-2.3
1,236,666	-		Atu4117	0.26	+1.4
1,236,717	+		Atu4117	0.32	+0.0
1,236,733	-		Atu4117	0.34	-1.0
1,236,859	+		Atu4117	0.48	+1.6
1,236,859	+		Atu4117	0.48	+0.6
1,236,867	-		Atu4117	0.49	-2.2
1,237,030	-		Atu4117	0.69	-4.4
1,237,142	+		Atu4117	0.82	-1.9
1,237,143	-		Atu4117	0.82	+0.6
1,237,145	+		Atu4117	0.82	-2.0
1,237,151	-		Atu4117	0.83	-2.0
1,237,153	+		Atu4117	0.83	-0.8
1,237,249	-				-1.2
1,237,409	-				-1.9