Strain Fitness in Agrobacterium fabrum C58 around Atu4113

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
1,231,131	+		Atu4112	0.35	-1.4
1,231,131	+		Atu4112	0.35	+0.2
1,231,195	+		Atu4112	0.40	-1.4
1,231,195	+		Atu4112	0.40	-2.1
1,231,195	+		Atu4112	0.40	-0.4
1,231,222	+		Atu4112	0.42	-2.2
1,231,296	-		Atu4112	0.49	-3.5
1,231,397	+		Atu4112	0.57	-1.9
1,231,405	-		Atu4112	0.58	-0.7
1,231,431	+		Atu4112	0.60	-1.4
1,231,486	-		Atu4112	0.65	-1.2
1,231,563	-		Atu4112	0.71	+1.8
1,231,621	-		Atu4112	0.76	-2.0
1,231,621	-		Atu4112	0.76	-1.4
1,231,657	+		Atu4112	0.79	-0.4
1,231,715	+		Atu4112	0.84	-1.4
1,231,723	-		Atu4112	0.85	-2.1
1,231,926	-				-2.9
1,231,967	+				+0.0
1,232,055	+				-0.2
1,232,154	-				-2.4
1,232,167	-				-0.4
1,232,197	-		Atu4113	0.11	-0.7
1,232,273	+		Atu4113	0.16	+1.2
1,232,281	-		Atu4113	0.16	-2.2
1,232,286	+		Atu4113	0.16	-1.0
1,232,294	-		Atu4113	0.17	-2.6
1,232,294	-		Atu4113	0.17	-1.7
1,232,294	-		Atu4113	0.17	-0.6
1,232,303	+		Atu4113	0.17	-0.9
1,232,446	-		Atu4113	0.26	-3.0
1,232,658	-		Atu4113	0.40	-0.7
1,232,699	-		Atu4113	0.42	-1.6
1,232,713	+		Atu4113	0.43	-2.0
1,232,831	-		Atu4113	0.50	-0.2
1,232,831	-		Atu4113	0.50	+0.0
1,232,887	-		Atu4113	0.54	-1.3
1,232,929	-		Atu4113	0.56	-1.2
1,232,948	+		Atu4113	0.58	-0.5
1,232,956	-		Atu4113	0.58	-0.4
1,232,956	-		Atu4113	0.58	-2.7
1,232,989	-		Atu4113	0.60	-1.0
1,232,990	+		Atu4113	0.60	-0.3
1,233,038	+		Atu4113	0.63	-0.6
1,233,162	+		Atu4113	0.71	-1.5
1,233,204	-		Atu4113	0.74	-0.3
1,233,358	-		Atu4113	0.83	-2.1
1,233,366	-		Atu4113	0.84	+0.2
1,233,563	-				-0.0
1,233,751	+				-1.4
1,233,788	+				-0.2
1,233,909	+		Atu4114	0.22	-2.6
1,234,193	+		Atu4114	0.50	-0.6
1,234,229	+		Atu4114	0.53	-1.0
1,234,229	+		Atu4114	0.53	-3.0
1,234,302	+		Atu4114	0.61	+0.2
1,234,404	+		Atu4114	0.71	-0.5
1,234,404	+		Atu4114	0.71	+0.0
1,234,478	+		Atu4114	0.78	-1.9
1,234,511	+		Atu4114	0.81	-1.4
1,234,526	+		Atu4114	0.83	-1.7
1,234,589	+		Atu4114	0.89	-0.6
1,234,597	-		Atu4114	0.90	-1.6
1,234,600	-				-2.0