Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3826 and Atu3827 are separated by 2 nucleotides Atu3827 and Atu3828 are separated by 50 nucleotides Atu3828 and Atu3829 are separated by 66 nucleotides
Atu3826: Atu3826 - acyl-CoA hydrolase, at 922,011 to 922,841
Atu3826
Atu3827: Atu3827 - LysR family transcriptional regulator, at 922,844 to 923,731
Atu3827
Atu3828: Atu3828 - acetyltransferase, at 923,782 to 924,360
Atu3828
Atu3829: Atu3829 - LysR family transcriptional regulator, at 924,427 to 925,278
Atu3829
Position (kb) 923
924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 922.811 kb on + strand at 922.834 kb on + strand at 922.836 kb on + strand at 922.842 kb on - strand at 922.844 kb on - strand at 922.857 kb on - strand at 922.926 kb on - strand at 922.937 kb on + strand, within Atu3827 at 922.952 kb on - strand, within Atu3827 at 922.980 kb on - strand, within Atu3827 at 923.015 kb on - strand, within Atu3827 at 923.029 kb on - strand, within Atu3827 at 923.169 kb on - strand, within Atu3827 at 923.204 kb on - strand, within Atu3827 at 923.344 kb on - strand, within Atu3827 at 923.351 kb on + strand, within Atu3827 at 923.417 kb on + strand, within Atu3827 at 923.427 kb on + strand, within Atu3827 at 923.624 kb on + strand, within Atu3827 at 923.632 kb on - strand, within Atu3827 at 923.666 kb on - strand at 923.758 kb on + strand at 923.788 kb on + strand at 923.833 kb on - strand at 923.842 kb on + strand, within Atu3828 at 923.848 kb on - strand, within Atu3828 at 923.917 kb on + strand, within Atu3828 at 923.917 kb on + strand, within Atu3828 at 923.925 kb on - strand, within Atu3828 at 924.095 kb on + strand, within Atu3828 at 924.107 kb on - strand, within Atu3828 at 924.109 kb on + strand, within Atu3828 at 924.127 kb on - strand, within Atu3828 at 924.138 kb on + strand, within Atu3828 at 924.145 kb on + strand, within Atu3828 at 924.172 kb on + strand, within Atu3828 at 924.172 kb on - strand, within Atu3828 at 924.195 kb on + strand, within Atu3828 at 924.199 kb on - strand, within Atu3828 at 924.203 kb on - strand, within Atu3828 at 924.206 kb on + strand, within Atu3828 at 924.235 kb on + strand, within Atu3828 at 924.250 kb on - strand, within Atu3828 at 924.257 kb on - strand, within Atu3828 at 924.268 kb on - strand, within Atu3828 at 924.348 kb on - strand at 924.418 kb on - strand at 924.507 kb on - strand at 924.538 kb on + strand, within Atu3829 at 924.546 kb on - strand, within Atu3829 at 924.559 kb on + strand, within Atu3829 at 924.656 kb on - strand, within Atu3829 at 924.735 kb on + strand, within Atu3829 at 924.767 kb on + strand, within Atu3829 at 924.777 kb on + strand, within Atu3829 at 924.947 kb on - strand, within Atu3829 at 924.962 kb on + strand, within Atu3829 at 924.972 kb on + strand, within Atu3829 at 924.972 kb on + strand, within Atu3829 at 925.020 kb on + strand, within Atu3829 at 925.054 kb on - strand, within Atu3829 at 925.072 kb on + strand, within Atu3829 at 925.115 kb on - strand, within Atu3829 at 925.140 kb on + strand, within Atu3829 at 925.181 kb on + strand, within Atu3829 at 925.193 kb on + strand at 925.211 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 922,811 + -3.1 922,834 + -0.4 922,836 + -0.2 922,842 - +1.0 922,844 - -1.1 922,857 - +0.1 922,926 - +0.3 922,937 + Atu3827 0.10 -0.4 922,952 - Atu3827 0.12 -1.1 922,980 - Atu3827 0.15 +0.7 923,015 - Atu3827 0.19 -0.1 923,029 - Atu3827 0.21 -1.2 923,169 - Atu3827 0.37 +0.7 923,204 - Atu3827 0.41 -0.3 923,344 - Atu3827 0.56 +1.1 923,351 + Atu3827 0.57 -0.2 923,417 + Atu3827 0.65 -0.3 923,427 + Atu3827 0.66 +0.8 923,624 + Atu3827 0.88 +1.6 923,632 - Atu3827 0.89 -2.6 923,666 - +1.2 923,758 + -1.4 923,788 + -0.1 923,833 - +1.3 923,842 + Atu3828 0.10 -0.9 923,848 - Atu3828 0.11 +1.6 923,917 + Atu3828 0.23 +0.2 923,917 + Atu3828 0.23 -0.6 923,925 - Atu3828 0.25 -0.3 924,095 + Atu3828 0.54 +0.4 924,107 - Atu3828 0.56 -2.5 924,109 + Atu3828 0.56 -1.1 924,127 - Atu3828 0.60 -0.0 924,138 + Atu3828 0.61 +0.7 924,145 + Atu3828 0.63 -0.5 924,172 + Atu3828 0.67 -0.4 924,172 - Atu3828 0.67 -1.6 924,195 + Atu3828 0.71 -2.2 924,199 - Atu3828 0.72 -0.4 924,203 - Atu3828 0.73 -0.4 924,206 + Atu3828 0.73 +0.0 924,235 + Atu3828 0.78 +2.4 924,250 - Atu3828 0.81 -0.3 924,257 - Atu3828 0.82 -1.2 924,268 - Atu3828 0.84 -0.9 924,348 - +0.2 924,418 - +0.3 924,507 - -0.0 924,538 + Atu3829 0.13 -3.2 924,546 - Atu3829 0.14 -1.2 924,559 + Atu3829 0.15 +0.3 924,656 - Atu3829 0.27 -1.1 924,735 + Atu3829 0.36 -0.2 924,767 + Atu3829 0.40 -0.0 924,777 + Atu3829 0.41 -2.0 924,947 - Atu3829 0.61 -0.3 924,962 + Atu3829 0.63 -0.8 924,972 + Atu3829 0.64 +0.5 924,972 + Atu3829 0.64 -2.5 925,020 + Atu3829 0.70 -2.1 925,054 - Atu3829 0.74 +0.3 925,072 + Atu3829 0.76 -0.1 925,115 - Atu3829 0.81 -0.1 925,140 + Atu3829 0.84 -0.8 925,181 + Atu3829 0.88 +0.7 925,193 + -0.8 925,211 - -0.6
Or see this region's nucleotide sequence