Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3796 and Atu3797 overlap by 1 nucleotides Atu3797 and Atu3798 are separated by 305 nucleotides Atu3798 and Atu3799 are separated by 35 nucleotides
Atu3796: Atu3796 - efflux protein, at 891,337 to 892,422
Atu3796
Atu3797: Atu3797 - HlyD family secretion protein, at 892,422 to 893,498
Atu3797
Atu3798: Atu3798 - TetR family transcriptional regulator, at 893,804 to 894,418
Atu3798
Atu3799: Atu3799 - GntR family transcriptional regulator, at 894,454 to 895,437
Atu3799
Position (kb) 892
893
894 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 891.446 kb on + strand, within Atu3796 at 891.503 kb on - strand, within Atu3796 at 891.629 kb on - strand, within Atu3796 at 891.716 kb on - strand, within Atu3796 at 891.758 kb on - strand, within Atu3796 at 891.798 kb on + strand, within Atu3796 at 891.807 kb on - strand, within Atu3796 at 891.827 kb on - strand, within Atu3796 at 891.901 kb on + strand, within Atu3796 at 891.921 kb on + strand, within Atu3796 at 891.928 kb on + strand, within Atu3796 at 891.959 kb on + strand, within Atu3796 at 892.002 kb on + strand, within Atu3796 at 892.005 kb on - strand, within Atu3796 at 892.055 kb on + strand, within Atu3796 at 892.055 kb on + strand, within Atu3796 at 892.063 kb on - strand, within Atu3796 at 892.073 kb on - strand, within Atu3796 at 892.073 kb on - strand, within Atu3796 at 892.186 kb on - strand, within Atu3796 at 892.255 kb on - strand, within Atu3796 at 892.258 kb on + strand, within Atu3796 at 892.300 kb on - strand, within Atu3796 at 892.408 kb on + strand at 892.509 kb on - strand at 892.514 kb on + strand at 892.517 kb on - strand at 892.556 kb on + strand, within Atu3797 at 892.559 kb on - strand, within Atu3797 at 892.635 kb on - strand, within Atu3797 at 892.729 kb on + strand, within Atu3797 at 892.729 kb on + strand, within Atu3797 at 892.729 kb on + strand, within Atu3797 at 892.737 kb on - strand, within Atu3797 at 892.737 kb on - strand, within Atu3797 at 892.747 kb on + strand, within Atu3797 at 892.782 kb on + strand, within Atu3797 at 892.995 kb on - strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.034 kb on + strand, within Atu3797 at 893.042 kb on - strand, within Atu3797 at 893.042 kb on - strand, within Atu3797 at 893.098 kb on - strand, within Atu3797 at 893.116 kb on + strand, within Atu3797 at 893.313 kb on + strand, within Atu3797 at 893.313 kb on + strand, within Atu3797 at 893.331 kb on - strand, within Atu3797 at 893.394 kb on + strand at 893.505 kb on + strand at 893.634 kb on + strand at 893.721 kb on + strand at 893.723 kb on + strand at 893.723 kb on + strand at 893.729 kb on - strand at 893.749 kb on - strand at 893.766 kb on + strand at 893.870 kb on + strand, within Atu3798 at 893.945 kb on - strand, within Atu3798 at 893.948 kb on + strand, within Atu3798 at 893.986 kb on + strand, within Atu3798 at 894.051 kb on + strand, within Atu3798 at 894.294 kb on - strand, within Atu3798 at 894.323 kb on - strand, within Atu3798 at 894.384 kb on + strand at 894.384 kb on + strand at 894.392 kb on - strand at 894.402 kb on - strand at 894.415 kb on - strand at 894.415 kb on - strand at 894.415 kb on - strand at 894.415 kb on - strand at 894.415 kb on - strand at 894.485 kb on + strand at 894.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 891,446 + Atu3796 0.10 +2.6 891,503 - Atu3796 0.15 +0.8 891,629 - Atu3796 0.27 +2.7 891,716 - Atu3796 0.35 +1.6 891,758 - Atu3796 0.39 +1.5 891,798 + Atu3796 0.42 +2.3 891,807 - Atu3796 0.43 +4.2 891,827 - Atu3796 0.45 +2.1 891,901 + Atu3796 0.52 +2.7 891,921 + Atu3796 0.54 +2.5 891,928 + Atu3796 0.54 +2.3 891,959 + Atu3796 0.57 +2.1 892,002 + Atu3796 0.61 +2.2 892,005 - Atu3796 0.62 +4.2 892,055 + Atu3796 0.66 +2.2 892,055 + Atu3796 0.66 +2.7 892,063 - Atu3796 0.67 +2.5 892,073 - Atu3796 0.68 +2.8 892,073 - Atu3796 0.68 +2.1 892,186 - Atu3796 0.78 +2.9 892,255 - Atu3796 0.85 +2.7 892,258 + Atu3796 0.85 +2.7 892,300 - Atu3796 0.89 +3.2 892,408 + +2.5 892,509 - +2.6 892,514 + +3.3 892,517 - +2.3 892,556 + Atu3797 0.12 +1.8 892,559 - Atu3797 0.13 +2.9 892,635 - Atu3797 0.20 +2.7 892,729 + Atu3797 0.29 +2.4 892,729 + Atu3797 0.29 +3.0 892,729 + Atu3797 0.29 +1.2 892,737 - Atu3797 0.29 +2.8 892,737 - Atu3797 0.29 +3.4 892,747 + Atu3797 0.30 +2.3 892,782 + Atu3797 0.33 +2.3 892,995 - Atu3797 0.53 +2.7 892,999 + Atu3797 0.54 +4.0 892,999 + Atu3797 0.54 -1.0 892,999 + Atu3797 0.54 +1.8 892,999 + Atu3797 0.54 -0.0 892,999 + Atu3797 0.54 +3.0 892,999 + Atu3797 0.54 +2.4 893,007 - Atu3797 0.54 +2.8 893,007 - Atu3797 0.54 +1.7 893,007 - Atu3797 0.54 +2.7 893,007 - Atu3797 0.54 +2.6 893,007 - Atu3797 0.54 +2.7 893,007 - Atu3797 0.54 +2.6 893,007 - Atu3797 0.54 +1.1 893,034 + Atu3797 0.57 +2.6 893,042 - Atu3797 0.58 +2.0 893,042 - Atu3797 0.58 +1.6 893,098 - Atu3797 0.63 +4.2 893,116 + Atu3797 0.64 +2.5 893,313 + Atu3797 0.83 +2.6 893,313 + Atu3797 0.83 +2.3 893,331 - Atu3797 0.84 +1.6 893,394 + +2.4 893,505 + +1.0 893,634 + +0.1 893,721 + -0.2 893,723 + +0.5 893,723 + -0.5 893,729 - -0.9 893,749 - +0.7 893,766 + +0.8 893,870 + Atu3798 0.11 -1.3 893,945 - Atu3798 0.23 -1.1 893,948 + Atu3798 0.23 +0.6 893,986 + Atu3798 0.30 -2.3 894,051 + Atu3798 0.40 +0.6 894,294 - Atu3798 0.80 -1.0 894,323 - Atu3798 0.84 -0.3 894,384 + -1.1 894,384 + -1.2 894,392 - -1.2 894,402 - +0.3 894,415 - -1.5 894,415 - -0.9 894,415 - -1.9 894,415 - -2.2 894,415 - -2.1 894,485 + -0.4 894,487 + -0.8
Or see this region's nucleotide sequence