Strain Fitness in Agrobacterium fabrum C58 around Atu3792

Experiment: Chloramphenicol 12.5 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3791 and Atu3792 overlap by 4 nucleotidesAtu3792 and Atu3793 are separated by 258 nucleotides Atu3791: Atu3791 - L-asparaginase, at 883,263 to 884,216 Atu3791 Atu3792: Atu3792 - L-asparagine permease, at 884,213 to 885,670 Atu3792 Atu3793: Atu3793 - aspartate ammonia-lyase, at 885,929 to 887,374 Atu3793 Position (kb) 884 885 886Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 883.231 kb on - strandat 883.307 kb on - strandat 883.347 kb on + strandat 883.347 kb on + strandat 883.350 kb on - strandat 883.355 kb on - strandat 883.372 kb on - strand, within Atu3791at 883.434 kb on - strand, within Atu3791at 883.489 kb on - strand, within Atu3791at 883.489 kb on - strand, within Atu3791at 883.517 kb on - strand, within Atu3791at 883.524 kb on - strand, within Atu3791at 883.576 kb on - strand, within Atu3791at 883.627 kb on + strand, within Atu3791at 883.635 kb on - strand, within Atu3791at 883.635 kb on - strand, within Atu3791at 883.677 kb on - strand, within Atu3791at 883.784 kb on - strand, within Atu3791at 883.885 kb on + strand, within Atu3791at 883.885 kb on + strand, within Atu3791at 883.909 kb on + strand, within Atu3791at 883.942 kb on + strand, within Atu3791at 884.036 kb on - strand, within Atu3791at 884.037 kb on + strand, within Atu3791at 884.038 kb on + strand, within Atu3791at 884.065 kb on + strand, within Atu3791at 884.065 kb on + strand, within Atu3791at 884.065 kb on + strand, within Atu3791at 884.073 kb on - strand, within Atu3791at 884.080 kb on - strand, within Atu3791at 884.108 kb on - strand, within Atu3791at 884.120 kb on + strand, within Atu3791at 884.197 kb on + strandat 884.197 kb on + strandat 884.197 kb on + strandat 884.197 kb on + strandat 884.205 kb on - strandat 884.205 kb on - strandat 884.224 kb on + strandat 884.224 kb on + strandat 884.275 kb on + strandat 884.280 kb on - strandat 884.407 kb on - strand, within Atu3792at 884.532 kb on - strand, within Atu3792at 884.552 kb on + strand, within Atu3792at 884.572 kb on - strand, within Atu3792at 884.625 kb on - strand, within Atu3792at 884.743 kb on - strand, within Atu3792at 884.778 kb on - strand, within Atu3792at 884.810 kb on - strand, within Atu3792at 884.837 kb on - strand, within Atu3792at 884.837 kb on - strand, within Atu3792at 884.842 kb on - strand, within Atu3792at 884.922 kb on - strand, within Atu3792at 884.937 kb on - strand, within Atu3792at 884.986 kb on - strand, within Atu3792at 885.134 kb on + strand, within Atu3792at 885.151 kb on + strand, within Atu3792at 885.154 kb on - strand, within Atu3792at 885.238 kb on - strand, within Atu3792at 885.244 kb on + strand, within Atu3792at 885.268 kb on - strand, within Atu3792at 885.315 kb on + strand, within Atu3792at 885.534 kb on + strandat 885.600 kb on + strandat 885.601 kb on - strandat 885.612 kb on + strandat 885.680 kb on - strandat 885.680 kb on - strandat 885.869 kb on - strandat 885.967 kb on - strandat 885.975 kb on + strandat 886.000 kb on + strandat 886.007 kb on + strandat 886.008 kb on - strandat 886.071 kb on - strandat 886.093 kb on - strand, within Atu3793at 886.103 kb on - strand, within Atu3793at 886.103 kb on - strand, within Atu3793at 886.128 kb on + strand, within Atu3793at 886.164 kb on - strand, within Atu3793at 886.226 kb on + strand, within Atu3793at 886.287 kb on + strand, within Atu3793at 886.392 kb on + strand, within Atu3793at 886.429 kb on + strand, within Atu3793at 886.429 kb on + strand, within Atu3793at 886.437 kb on - strand, within Atu3793at 886.494 kb on - strand, within Atu3793at 886.582 kb on - strand, within Atu3793at 886.582 kb on - strand, within Atu3793at 886.665 kb on + strand, within Atu3793

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL
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883,231 - -1.6
883,307 - +0.0
883,347 + -1.4
883,347 + +0.0
883,350 - +0.9
883,355 - +0.1
883,372 - Atu3791 0.11 +0.1
883,434 - Atu3791 0.18 +1.2
883,489 - Atu3791 0.24 +1.6
883,489 - Atu3791 0.24 +1.2
883,517 - Atu3791 0.27 -1.1
883,524 - Atu3791 0.27 -1.4
883,576 - Atu3791 0.33 -1.7
883,627 + Atu3791 0.38 +1.6
883,635 - Atu3791 0.39 +1.7
883,635 - Atu3791 0.39 -0.9
883,677 - Atu3791 0.43 -1.2
883,784 - Atu3791 0.55 +0.1
883,885 + Atu3791 0.65 +0.2
883,885 + Atu3791 0.65 -0.4
883,909 + Atu3791 0.68 +0.1
883,942 + Atu3791 0.71 +0.3
884,036 - Atu3791 0.81 +1.3
884,037 + Atu3791 0.81 -1.7
884,038 + Atu3791 0.81 -0.4
884,065 + Atu3791 0.84 -1.4
884,065 + Atu3791 0.84 -1.3
884,065 + Atu3791 0.84 +0.6
884,073 - Atu3791 0.85 -1.3
884,080 - Atu3791 0.86 -0.5
884,108 - Atu3791 0.89 +0.5
884,120 + Atu3791 0.90 -0.4
884,197 + +1.6
884,197 + +0.0
884,197 + -0.2
884,197 + +0.8
884,205 - -0.3
884,205 - +0.2
884,224 + -2.0
884,224 + -1.0
884,275 + +0.4
884,280 - +2.6
884,407 - Atu3792 0.13 +0.5
884,532 - Atu3792 0.22 -2.8
884,552 + Atu3792 0.23 -3.0
884,572 - Atu3792 0.25 -0.5
884,625 - Atu3792 0.28 -1.4
884,743 - Atu3792 0.36 -0.4
884,778 - Atu3792 0.39 +0.1
884,810 - Atu3792 0.41 -2.2
884,837 - Atu3792 0.43 -2.9
884,837 - Atu3792 0.43 -1.1
884,842 - Atu3792 0.43 +0.6
884,922 - Atu3792 0.49 -0.4
884,937 - Atu3792 0.50 -1.2
884,986 - Atu3792 0.53 -0.6
885,134 + Atu3792 0.63 -0.5
885,151 + Atu3792 0.64 +0.1
885,154 - Atu3792 0.65 -3.0
885,238 - Atu3792 0.70 -1.2
885,244 + Atu3792 0.71 +0.6
885,268 - Atu3792 0.72 -0.8
885,315 + Atu3792 0.76 -2.3
885,534 + -0.6
885,600 + -0.7
885,601 - +0.3
885,612 + -1.7
885,680 - -1.6
885,680 - +0.4
885,869 - +0.0
885,967 - +0.6
885,975 + +0.2
886,000 + -1.6
886,007 + +0.4
886,008 - +0.2
886,071 - -0.8
886,093 - Atu3793 0.11 -0.4
886,103 - Atu3793 0.12 -2.7
886,103 - Atu3793 0.12 -1.1
886,128 + Atu3793 0.14 +0.2
886,164 - Atu3793 0.16 +0.2
886,226 + Atu3793 0.21 -0.8
886,287 + Atu3793 0.25 +1.6
886,392 + Atu3793 0.32 -0.3
886,429 + Atu3793 0.35 -1.4
886,429 + Atu3793 0.35 +0.3
886,437 - Atu3793 0.35 -1.7
886,494 - Atu3793 0.39 -0.6
886,582 - Atu3793 0.45 +0.6
886,582 - Atu3793 0.45 +0.6
886,665 + Atu3793 0.51 -0.2

Or see this region's nucleotide sequence