Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3765 and Atu3766 are separated by 99 nucleotides Atu3766 and Atu3767 overlap by 4 nucleotides
Atu3765: Atu3765 - oligoendopeptidase F, at 846,553 to 848,403
Atu3765
Atu3766: Atu3766 - hypothetical protein, at 848,503 to 849,138
Atu3766
Atu3767: Atu3767 - diguanylate cyclase, at 849,135 to 850,043
Atu3767
Position (kb) 848
849
850 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 847.558 kb on - strand, within Atu3765 at 847.686 kb on - strand, within Atu3765 at 847.720 kb on + strand, within Atu3765 at 847.789 kb on - strand, within Atu3765 at 847.800 kb on - strand, within Atu3765 at 847.823 kb on + strand, within Atu3765 at 847.829 kb on - strand, within Atu3765 at 847.838 kb on + strand, within Atu3765 at 847.838 kb on + strand, within Atu3765 at 847.917 kb on + strand, within Atu3765 at 848.041 kb on - strand, within Atu3765 at 848.041 kb on - strand, within Atu3765 at 848.089 kb on + strand, within Atu3765 at 848.166 kb on + strand, within Atu3765 at 848.280 kb on + strand at 848.282 kb on + strand at 848.397 kb on + strand at 848.405 kb on - strand at 848.422 kb on - strand at 848.479 kb on - strand at 848.479 kb on - strand at 848.489 kb on + strand at 848.507 kb on - strand at 848.524 kb on - strand at 848.604 kb on - strand, within Atu3766 at 848.632 kb on + strand, within Atu3766 at 848.650 kb on - strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.698 kb on + strand, within Atu3766 at 848.706 kb on + strand, within Atu3766 at 848.706 kb on + strand, within Atu3766 at 848.714 kb on - strand, within Atu3766 at 848.714 kb on - strand, within Atu3766 at 848.847 kb on + strand, within Atu3766 at 848.887 kb on + strand, within Atu3766 at 848.901 kb on - strand, within Atu3766 at 848.983 kb on + strand, within Atu3766 at 848.991 kb on - strand, within Atu3766 at 849.007 kb on + strand, within Atu3766 at 849.018 kb on - strand, within Atu3766 at 849.022 kb on + strand, within Atu3766 at 849.030 kb on - strand, within Atu3766 at 849.120 kb on - strand at 849.142 kb on - strand at 849.268 kb on - strand, within Atu3767 at 849.675 kb on - strand, within Atu3767 at 849.675 kb on - strand, within Atu3767 at 849.733 kb on - strand, within Atu3767 at 849.750 kb on - strand, within Atu3767 at 849.815 kb on - strand, within Atu3767 at 849.857 kb on - strand, within Atu3767 at 849.992 kb on + strand at 849.995 kb on + strand at 850.090 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 847,558 - Atu3765 0.54 -0.8 847,686 - Atu3765 0.61 +1.1 847,720 + Atu3765 0.63 +0.8 847,789 - Atu3765 0.67 +0.2 847,800 - Atu3765 0.67 -1.0 847,823 + Atu3765 0.69 -0.1 847,829 - Atu3765 0.69 +0.3 847,838 + Atu3765 0.69 +0.1 847,838 + Atu3765 0.69 -0.8 847,917 + Atu3765 0.74 +0.2 848,041 - Atu3765 0.80 -0.4 848,041 - Atu3765 0.80 +0.0 848,089 + Atu3765 0.83 -0.6 848,166 + Atu3765 0.87 +0.6 848,280 + -1.4 848,282 + +0.4 848,397 + -0.2 848,405 - -0.0 848,422 - -0.2 848,479 - -0.7 848,479 - +0.8 848,489 + +0.4 848,507 - -0.5 848,524 - -2.2 848,604 - Atu3766 0.16 -0.4 848,632 + Atu3766 0.20 +0.5 848,650 - Atu3766 0.23 +0.2 848,687 + Atu3766 0.29 -0.7 848,687 + Atu3766 0.29 +0.8 848,687 + Atu3766 0.29 -0.1 848,687 + Atu3766 0.29 +0.0 848,698 + Atu3766 0.31 +0.8 848,706 + Atu3766 0.32 +1.3 848,706 + Atu3766 0.32 +0.6 848,714 - Atu3766 0.33 +0.3 848,714 - Atu3766 0.33 +1.9 848,847 + Atu3766 0.54 +0.0 848,887 + Atu3766 0.60 -0.7 848,901 - Atu3766 0.63 +0.8 848,983 + Atu3766 0.75 -0.1 848,991 - Atu3766 0.77 +0.9 849,007 + Atu3766 0.79 -0.3 849,018 - Atu3766 0.81 +0.5 849,022 + Atu3766 0.82 +3.3 849,030 - Atu3766 0.83 -0.8 849,120 - -0.5 849,142 - +1.1 849,268 - Atu3767 0.15 -1.0 849,675 - Atu3767 0.59 +1.1 849,675 - Atu3767 0.59 +1.2 849,733 - Atu3767 0.66 -0.2 849,750 - Atu3767 0.68 -1.6 849,815 - Atu3767 0.75 -0.5 849,857 - Atu3767 0.79 -0.6 849,992 + +1.3 849,995 + +1.1 850,090 + -1.7
Or see this region's nucleotide sequence