Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3738 and Atu3739 are separated by 67 nucleotides Atu3739 and Atu3740 are separated by 191 nucleotides
Atu3738: Atu3738 - potassium/proton antiporter, at 818,445 to 820,310
Atu3738
Atu3739: Atu3739 - phosphoglycerate kinase, at 820,378 to 821,580
Atu3739
Atu3740: Atu3740 - fructose bisphosphate aldolase, at 821,772 to 822,797
Atu3740
Position (kb) 820
821
822 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 819.407 kb on - strand, within Atu3738 at 819.409 kb on + strand, within Atu3738 at 819.417 kb on + strand, within Atu3738 at 819.442 kb on - strand, within Atu3738 at 819.507 kb on - strand, within Atu3738 at 819.581 kb on + strand, within Atu3738 at 819.581 kb on + strand, within Atu3738 at 819.708 kb on + strand, within Atu3738 at 819.729 kb on - strand, within Atu3738 at 819.733 kb on - strand, within Atu3738 at 819.746 kb on + strand, within Atu3738 at 819.851 kb on + strand, within Atu3738 at 819.859 kb on - strand, within Atu3738 at 819.972 kb on + strand, within Atu3738 at 819.979 kb on + strand, within Atu3738 at 819.980 kb on - strand, within Atu3738 at 819.989 kb on + strand, within Atu3738 at 820.016 kb on - strand, within Atu3738 at 820.018 kb on + strand, within Atu3738 at 820.063 kb on - strand, within Atu3738 at 820.084 kb on - strand, within Atu3738 at 820.144 kb on + strand at 820.202 kb on + strand at 820.225 kb on - strand at 820.242 kb on - strand at 820.278 kb on + strand at 820.278 kb on + strand at 820.345 kb on - strand at 820.345 kb on - strand at 820.368 kb on + strand at 821.072 kb on + strand, within Atu3739 at 821.450 kb on + strand, within Atu3739 at 821.721 kb on + strand at 821.790 kb on - strand at 821.823 kb on + strand at 821.824 kb on - strand at 821.993 kb on + strand, within Atu3740 at 822.024 kb on + strand, within Atu3740 at 822.029 kb on + strand, within Atu3740 at 822.029 kb on + strand, within Atu3740 at 822.081 kb on - strand, within Atu3740 at 822.088 kb on + strand, within Atu3740 at 822.267 kb on - strand, within Atu3740 at 822.278 kb on + strand, within Atu3740 at 822.370 kb on + strand, within Atu3740
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 819,407 - Atu3738 0.52 -0.3 819,409 + Atu3738 0.52 -1.1 819,417 + Atu3738 0.52 +0.3 819,442 - Atu3738 0.53 -1.4 819,507 - Atu3738 0.57 +0.1 819,581 + Atu3738 0.61 +0.9 819,581 + Atu3738 0.61 +1.4 819,708 + Atu3738 0.68 -0.1 819,729 - Atu3738 0.69 -2.0 819,733 - Atu3738 0.69 +0.6 819,746 + Atu3738 0.70 -2.1 819,851 + Atu3738 0.75 +0.5 819,859 - Atu3738 0.76 -0.4 819,972 + Atu3738 0.82 +1.6 819,979 + Atu3738 0.82 +0.5 819,980 - Atu3738 0.82 -1.0 819,989 + Atu3738 0.83 -0.1 820,016 - Atu3738 0.84 -0.4 820,018 + Atu3738 0.84 -1.2 820,063 - Atu3738 0.87 +0.0 820,084 - Atu3738 0.88 -0.0 820,144 + +0.4 820,202 + +0.5 820,225 - +0.3 820,242 - -1.4 820,278 + -3.6 820,278 + +0.2 820,345 - -0.7 820,345 - -1.0 820,368 + -0.6 821,072 + Atu3739 0.58 -1.0 821,450 + Atu3739 0.89 -1.4 821,721 + +0.3 821,790 - +2.1 821,823 + +0.3 821,824 - +1.9 821,993 + Atu3740 0.22 -0.1 822,024 + Atu3740 0.25 +1.8 822,029 + Atu3740 0.25 +3.4 822,029 + Atu3740 0.25 +1.8 822,081 - Atu3740 0.30 +1.3 822,088 + Atu3740 0.31 +2.6 822,267 - Atu3740 0.48 +0.5 822,278 + Atu3740 0.49 +2.0 822,370 + Atu3740 0.58 +2.1
Or see this region's nucleotide sequence