Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3695 and Atu3696 are separated by 118 nucleotides Atu3696 and Atu3697 are separated by 10 nucleotides Atu3697 and Atu3698 are separated by 92 nucleotides
Atu3695: Atu3695 - hypothetical protein, at 771,236 to 776,692
Atu3695
Atu3696: Atu3696 - hypothetical protein, at 776,811 to 776,999
Atu3696
Atu3697: Atu3697 - ATP-dependent protease LA 2, at 777,010 to 777,657
Atu3697
Atu3698: Atu3698 - thioredoxin, at 777,750 to 778,718
Atu3698
Position (kb) 777
778 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 776.030 kb on + strand, within Atu3695 at 776.176 kb on - strand at 776.210 kb on - strand at 776.250 kb on + strand at 776.365 kb on - strand at 776.429 kb on - strand at 776.483 kb on + strand at 776.720 kb on + strand at 776.799 kb on + strand at 777.055 kb on + strand at 777.168 kb on + strand, within Atu3697 at 777.196 kb on + strand, within Atu3697 at 777.242 kb on + strand, within Atu3697 at 777.299 kb on + strand, within Atu3697 at 777.408 kb on - strand, within Atu3697 at 777.501 kb on + strand, within Atu3697 at 777.534 kb on - strand, within Atu3697 at 777.732 kb on + strand at 777.786 kb on + strand at 777.883 kb on + strand, within Atu3698 at 777.936 kb on - strand, within Atu3698 at 777.943 kb on + strand, within Atu3698 at 778.356 kb on + strand, within Atu3698 at 778.357 kb on - strand, within Atu3698 at 778.444 kb on + strand, within Atu3698 at 778.504 kb on + strand, within Atu3698 at 778.620 kb on - strand, within Atu3698 at 778.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 776,030 + Atu3695 0.88 -0.5 776,176 - +0.8 776,210 - -0.3 776,250 + -1.2 776,365 - -0.2 776,429 - +0.5 776,483 + +1.1 776,720 + -0.0 776,799 + +3.2 777,055 + -0.7 777,168 + Atu3697 0.24 -1.4 777,196 + Atu3697 0.29 -0.2 777,242 + Atu3697 0.36 -1.7 777,299 + Atu3697 0.45 +0.0 777,408 - Atu3697 0.61 -1.2 777,501 + Atu3697 0.76 -0.7 777,534 - Atu3697 0.81 -2.7 777,732 + -3.5 777,786 + +0.8 777,883 + Atu3698 0.14 -0.7 777,936 - Atu3698 0.19 -0.6 777,943 + Atu3698 0.20 +0.3 778,356 + Atu3698 0.63 +0.1 778,357 - Atu3698 0.63 +0.0 778,444 + Atu3698 0.72 +0.6 778,504 + Atu3698 0.78 -0.4 778,620 - Atu3698 0.90 -0.4 778,630 - -2.8
Or see this region's nucleotide sequence