Strain Fitness in Agrobacterium fabrum C58 around Atu3682

Experiment: Chloramphenicol 12.5 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3681 and Atu3682 overlap by 4 nucleotidesAtu3682 and Atu3683 are separated by 11 nucleotides Atu3681: Atu3681 - polyketide synthase, at 738,077 to 742,510 Atu3681 Atu3682: Atu3682 - non-ribosomal peptide synthetase, siderophore biosynthesis protein, at 742,507 to 749,706 Atu3682 Atu3683: Atu3683 - peptide synthetase, siderophore biosynthesis protein, at 749,718 to 757,409 Atu3683 Position (kb) 742 743 744 745 746 747 748 749 750Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 741.575 kb on - strand, within Atu3681at 741.575 kb on - strand, within Atu3681at 741.624 kb on - strand, within Atu3681at 741.865 kb on + strand, within Atu3681at 741.873 kb on + strand, within Atu3681at 741.906 kb on + strand, within Atu3681at 741.914 kb on + strand, within Atu3681at 742.088 kb on - strandat 742.253 kb on - strandat 742.312 kb on + strandat 742.384 kb on - strandat 742.468 kb on - strandat 742.544 kb on - strandat 742.595 kb on - strandat 742.597 kb on + strandat 742.645 kb on + strandat 742.645 kb on + strandat 742.653 kb on - strandat 742.653 kb on - strandat 742.653 kb on - strandat 742.713 kb on - strandat 742.749 kb on - strandat 742.921 kb on + strandat 742.929 kb on - strandat 742.960 kb on - strandat 743.031 kb on + strandat 743.055 kb on + strandat 743.082 kb on + strandat 743.102 kb on + strandat 743.105 kb on - strandat 743.105 kb on - strandat 743.105 kb on - strandat 743.116 kb on - strandat 743.168 kb on + strandat 743.228 kb on + strand, within Atu3682at 743.242 kb on + strand, within Atu3682at 743.242 kb on + strand, within Atu3682at 743.250 kb on + strand, within Atu3682at 743.250 kb on - strand, within Atu3682at 743.250 kb on - strand, within Atu3682at 743.327 kb on + strand, within Atu3682at 743.333 kb on - strand, within Atu3682at 743.345 kb on - strand, within Atu3682at 743.445 kb on - strand, within Atu3682at 743.468 kb on + strand, within Atu3682at 743.552 kb on + strand, within Atu3682at 743.990 kb on + strand, within Atu3682at 744.036 kb on + strand, within Atu3682at 744.156 kb on + strand, within Atu3682at 744.196 kb on - strand, within Atu3682at 744.259 kb on - strand, within Atu3682at 744.263 kb on - strand, within Atu3682at 744.362 kb on + strand, within Atu3682at 744.370 kb on + strand, within Atu3682at 744.370 kb on - strand, within Atu3682at 744.418 kb on - strand, within Atu3682at 744.433 kb on - strand, within Atu3682at 744.454 kb on - strand, within Atu3682at 744.565 kb on + strand, within Atu3682at 744.620 kb on - strand, within Atu3682at 744.631 kb on + strand, within Atu3682at 744.636 kb on + strand, within Atu3682at 744.644 kb on - strand, within Atu3682at 744.644 kb on - strand, within Atu3682at 744.644 kb on - strand, within Atu3682at 744.690 kb on + strand, within Atu3682at 744.690 kb on + strand, within Atu3682at 744.698 kb on - strand, within Atu3682at 744.785 kb on + strand, within Atu3682at 744.849 kb on - strand, within Atu3682at 744.941 kb on - strand, within Atu3682at 745.033 kb on + strand, within Atu3682at 745.043 kb on + strand, within Atu3682at 745.115 kb on - strand, within Atu3682at 745.185 kb on + strand, within Atu3682at 745.322 kb on + strand, within Atu3682at 745.389 kb on + strand, within Atu3682at 745.421 kb on + strand, within Atu3682at 745.561 kb on + strand, within Atu3682at 745.569 kb on - strand, within Atu3682at 745.588 kb on + strand, within Atu3682at 745.635 kb on + strand, within Atu3682at 745.643 kb on - strand, within Atu3682at 745.694 kb on + strand, within Atu3682at 745.759 kb on - strand, within Atu3682at 745.760 kb on - strand, within Atu3682at 745.815 kb on - strand, within Atu3682at 745.841 kb on + strand, within Atu3682at 746.007 kb on + strand, within Atu3682at 746.034 kb on + strand, within Atu3682at 746.135 kb on - strand, within Atu3682at 746.174 kb on + strand, within Atu3682at 746.320 kb on + strand, within Atu3682at 746.345 kb on + strand, within Atu3682at 746.353 kb on - strand, within Atu3682at 746.475 kb on + strand, within Atu3682at 746.536 kb on + strand, within Atu3682at 746.543 kb on - strand, within Atu3682at 746.555 kb on + strand, within Atu3682at 746.592 kb on - strand, within Atu3682at 746.592 kb on - strand, within Atu3682at 746.779 kb on + strand, within Atu3682at 746.800 kb on + strand, within Atu3682at 746.838 kb on + strand, within Atu3682at 746.902 kb on + strand, within Atu3682at 746.910 kb on - strand, within Atu3682at 746.979 kb on + strand, within Atu3682at 747.103 kb on + strand, within Atu3682at 747.103 kb on + strand, within Atu3682at 747.111 kb on - strand, within Atu3682at 747.111 kb on - strand, within Atu3682at 747.111 kb on - strand, within Atu3682at 747.182 kb on + strand, within Atu3682at 747.278 kb on - strand, within Atu3682at 747.328 kb on + strand, within Atu3682at 747.328 kb on + strand, within Atu3682at 747.370 kb on + strand, within Atu3682at 747.476 kb on + strand, within Atu3682at 747.476 kb on + strand, within Atu3682at 747.476 kb on + strand, within Atu3682at 747.484 kb on - strand, within Atu3682at 747.484 kb on - strand, within Atu3682at 747.484 kb on - strand, within Atu3682at 747.600 kb on - strand, within Atu3682at 747.655 kb on - strand, within Atu3682at 747.717 kb on - strand, within Atu3682at 747.758 kb on - strand, within Atu3682at 747.843 kb on - strand, within Atu3682at 747.843 kb on - strand, within Atu3682at 747.847 kb on + strand, within Atu3682at 747.927 kb on - strand, within Atu3682at 747.968 kb on + strand, within Atu3682at 747.976 kb on - strand, within Atu3682at 747.983 kb on + strand, within Atu3682at 747.986 kb on - strand, within Atu3682at 747.991 kb on - strand, within Atu3682at 747.991 kb on - strand, within Atu3682at 748.011 kb on - strand, within Atu3682at 748.011 kb on - strand, within Atu3682at 748.050 kb on - strand, within Atu3682at 748.118 kb on - strand, within Atu3682at 748.324 kb on - strand, within Atu3682at 748.341 kb on + strand, within Atu3682at 748.657 kb on + strand, within Atu3682at 748.662 kb on + strand, within Atu3682at 748.665 kb on - strand, within Atu3682at 748.665 kb on - strand, within Atu3682at 748.665 kb on - strand, within Atu3682at 748.667 kb on + strand, within Atu3682at 748.709 kb on + strand, within Atu3682at 748.748 kb on + strand, within Atu3682at 748.758 kb on + strand, within Atu3682at 748.780 kb on + strand, within Atu3682at 748.962 kb on + strand, within Atu3682at 748.999 kb on - strandat 749.065 kb on - strandat 749.186 kb on - strandat 749.275 kb on + strandat 749.385 kb on - strandat 749.414 kb on + strandat 749.419 kb on + strandat 749.506 kb on + strandat 749.556 kb on - strandat 749.635 kb on + strandat 749.721 kb on - strandat 749.757 kb on + strandat 749.855 kb on + strandat 749.922 kb on + strandat 749.928 kb on - strandat 749.930 kb on - strandat 749.990 kb on - strandat 750.123 kb on + strandat 750.128 kb on + strandat 750.138 kb on + strandat 750.143 kb on + strandat 750.151 kb on - strandat 750.186 kb on - strandat 750.242 kb on - strandat 750.305 kb on + strandat 750.487 kb on - strandat 750.487 kb on - strandat 750.487 kb on - strandat 750.497 kb on - strand, within Atu3683at 750.536 kb on + strand, within Atu3683at 750.555 kb on - strand, within Atu3683at 750.609 kb on + strand, within Atu3683at 750.617 kb on - strand, within Atu3683

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL
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741,575 - Atu3681 0.79 +0.2
741,575 - Atu3681 0.79 -0.3
741,624 - Atu3681 0.80 +0.2
741,865 + Atu3681 0.85 -0.5
741,873 + Atu3681 0.86 -1.0
741,906 + Atu3681 0.86 -1.1
741,914 + Atu3681 0.87 -1.1
742,088 - +1.0
742,253 - -0.7
742,312 + +0.4
742,384 - -1.4
742,468 - +0.5
742,544 - -0.5
742,595 - +0.1
742,597 + +1.4
742,645 + +0.6
742,645 + +0.3
742,653 - +1.6
742,653 - +1.3
742,653 - +0.6
742,713 - +0.5
742,749 - +1.7
742,921 + -0.7
742,929 - +1.0
742,960 - +0.6
743,031 + -1.1
743,055 + +0.6
743,082 + +1.0
743,102 + +0.0
743,105 - +1.2
743,105 - +1.3
743,105 - +1.0
743,116 - +0.2
743,168 + +0.6
743,228 + Atu3682 0.10 +2.3
743,242 + Atu3682 0.10 +0.0
743,242 + Atu3682 0.10 -1.9
743,250 + Atu3682 0.10 -2.0
743,250 - Atu3682 0.10 -0.7
743,250 - Atu3682 0.10 +0.2
743,327 + Atu3682 0.11 -1.2
743,333 - Atu3682 0.11 +1.3
743,345 - Atu3682 0.12 -3.0
743,445 - Atu3682 0.13 -1.8
743,468 + Atu3682 0.13 -1.2
743,552 + Atu3682 0.15 -1.4
743,990 + Atu3682 0.21 -0.2
744,036 + Atu3682 0.21 -1.1
744,156 + Atu3682 0.23 +0.4
744,196 - Atu3682 0.23 +0.6
744,259 - Atu3682 0.24 -0.4
744,263 - Atu3682 0.24 +2.5
744,362 + Atu3682 0.26 +1.0
744,370 + Atu3682 0.26 -1.5
744,370 - Atu3682 0.26 +0.1
744,418 - Atu3682 0.27 +1.4
744,433 - Atu3682 0.27 -0.7
744,454 - Atu3682 0.27 +0.5
744,565 + Atu3682 0.29 -1.3
744,620 - Atu3682 0.29 +0.9
744,631 + Atu3682 0.29 +3.6
744,636 + Atu3682 0.30 -0.7
744,644 - Atu3682 0.30 +0.8
744,644 - Atu3682 0.30 +0.5
744,644 - Atu3682 0.30 +0.3
744,690 + Atu3682 0.30 -2.0
744,690 + Atu3682 0.30 +0.7
744,698 - Atu3682 0.30 -1.4
744,785 + Atu3682 0.32 +0.8
744,849 - Atu3682 0.33 -0.4
744,941 - Atu3682 0.34 +3.4
745,033 + Atu3682 0.35 -0.9
745,043 + Atu3682 0.35 +3.4
745,115 - Atu3682 0.36 -1.0
745,185 + Atu3682 0.37 +0.1
745,322 + Atu3682 0.39 +0.3
745,389 + Atu3682 0.40 -0.7
745,421 + Atu3682 0.40 -3.5
745,561 + Atu3682 0.42 +1.4
745,569 - Atu3682 0.43 +0.9
745,588 + Atu3682 0.43 -3.3
745,635 + Atu3682 0.43 +1.1
745,643 - Atu3682 0.44 +2.0
745,694 + Atu3682 0.44 -0.5
745,759 - Atu3682 0.45 +0.4
745,760 - Atu3682 0.45 +0.7
745,815 - Atu3682 0.46 +0.2
745,841 + Atu3682 0.46 -0.7
746,007 + Atu3682 0.49 +1.8
746,034 + Atu3682 0.49 -0.2
746,135 - Atu3682 0.50 +1.0
746,174 + Atu3682 0.51 -0.2
746,320 + Atu3682 0.53 -0.8
746,345 + Atu3682 0.53 -0.1
746,353 - Atu3682 0.53 -0.1
746,475 + Atu3682 0.55 -0.0
746,536 + Atu3682 0.56 +0.2
746,543 - Atu3682 0.56 +0.3
746,555 + Atu3682 0.56 +0.5
746,592 - Atu3682 0.57 -1.8
746,592 - Atu3682 0.57 +0.2
746,779 + Atu3682 0.59 -2.4
746,800 + Atu3682 0.60 -1.5
746,838 + Atu3682 0.60 +0.5
746,902 + Atu3682 0.61 +0.0
746,910 - Atu3682 0.61 +0.0
746,979 + Atu3682 0.62 +1.2
747,103 + Atu3682 0.64 +0.9
747,103 + Atu3682 0.64 +1.0
747,111 - Atu3682 0.64 -1.4
747,111 - Atu3682 0.64 -0.7
747,111 - Atu3682 0.64 +1.6
747,182 + Atu3682 0.65 -0.1
747,278 - Atu3682 0.66 +0.5
747,328 + Atu3682 0.67 +0.9
747,328 + Atu3682 0.67 -1.0
747,370 + Atu3682 0.68 -0.1
747,476 + Atu3682 0.69 +0.2
747,476 + Atu3682 0.69 +0.6
747,476 + Atu3682 0.69 -0.0
747,484 - Atu3682 0.69 +1.1
747,484 - Atu3682 0.69 -0.3
747,484 - Atu3682 0.69 -1.5
747,600 - Atu3682 0.71 -0.1
747,655 - Atu3682 0.71 +3.2
747,717 - Atu3682 0.72 -0.7
747,758 - Atu3682 0.73 +1.8
747,843 - Atu3682 0.74 +1.6
747,843 - Atu3682 0.74 -0.5
747,847 + Atu3682 0.74 -0.0
747,927 - Atu3682 0.75 +0.5
747,968 + Atu3682 0.76 +3.0
747,976 - Atu3682 0.76 +0.5
747,983 + Atu3682 0.76 +0.3
747,986 - Atu3682 0.76 -0.8
747,991 - Atu3682 0.76 -0.4
747,991 - Atu3682 0.76 -1.2
748,011 - Atu3682 0.76 -0.1
748,011 - Atu3682 0.76 +0.4
748,050 - Atu3682 0.77 -1.0
748,118 - Atu3682 0.78 +0.3
748,324 - Atu3682 0.81 -0.7
748,341 + Atu3682 0.81 +0.4
748,657 + Atu3682 0.85 +0.2
748,662 + Atu3682 0.85 -0.7
748,665 - Atu3682 0.86 -1.3
748,665 - Atu3682 0.86 +0.1
748,665 - Atu3682 0.86 -2.0
748,667 + Atu3682 0.86 +0.6
748,709 + Atu3682 0.86 -1.5
748,748 + Atu3682 0.87 +0.8
748,758 + Atu3682 0.87 +0.5
748,780 + Atu3682 0.87 -0.7
748,962 + Atu3682 0.90 +0.4
748,999 - -1.2
749,065 - +1.0
749,186 - +1.3
749,275 + +1.3
749,385 - +0.6
749,414 + +2.9
749,419 + +0.9
749,506 + +0.0
749,556 - +0.1
749,635 + +1.6
749,721 - -0.4
749,757 + +0.0
749,855 + +0.4
749,922 + -1.3
749,928 - +0.1
749,930 - -2.5
749,990 - -0.8
750,123 + +0.7
750,128 + +1.0
750,138 + -0.2
750,143 + +0.1
750,151 - -1.2
750,186 - +1.5
750,242 - +1.2
750,305 + -1.4
750,487 - +0.3
750,487 - -1.2
750,487 - +0.6
750,497 - Atu3683 0.10 -2.0
750,536 + Atu3683 0.11 +0.4
750,555 - Atu3683 0.11 -1.0
750,609 + Atu3683 0.12 +0.9
750,617 - Atu3683 0.12 -0.4

Or see this region's nucleotide sequence