Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3607 and Atu3608 are separated by 113 nucleotides Atu3608 and Atu3609 are separated by 114 nucleotides Atu3609 and Atu3610 overlap by 28 nucleotides
Atu3607: Atu3607 - cell division protein, at 662,114 to 663,121
Atu3607
Atu3608: Atu3608 - hypothetical protein, at 663,235 to 663,966
Atu3608
Atu3609: Atu3609 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 664,081 to 664,878
Atu3609
Atu3610: Atu3610 - transporter, at 664,851 to 665,402
Atu3610
Position (kb) 663
664 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 663.267 kb on - strand at 663.340 kb on - strand, within Atu3608 at 663.340 kb on - strand, within Atu3608 at 663.445 kb on + strand, within Atu3608 at 663.470 kb on + strand, within Atu3608 at 663.492 kb on + strand, within Atu3608 at 663.492 kb on + strand, within Atu3608 at 663.505 kb on - strand, within Atu3608 at 663.529 kb on + strand, within Atu3608 at 663.579 kb on - strand, within Atu3608 at 663.833 kb on + strand, within Atu3608 at 663.912 kb on + strand at 663.920 kb on - strand at 663.923 kb on + strand at 664.011 kb on + strand at 664.312 kb on + strand, within Atu3609 at 664.331 kb on + strand, within Atu3609 at 664.331 kb on + strand, within Atu3609 at 664.339 kb on - strand, within Atu3609 at 664.386 kb on + strand, within Atu3609 at 664.423 kb on - strand, within Atu3609 at 664.433 kb on - strand, within Atu3609 at 664.649 kb on - strand, within Atu3609 at 664.665 kb on + strand, within Atu3609 at 664.673 kb on - strand, within Atu3609 at 664.957 kb on + strand, within Atu3610 at 664.965 kb on - strand, within Atu3610
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 663,267 - +2.2 663,340 - Atu3608 0.14 -1.0 663,340 - Atu3608 0.14 -0.3 663,445 + Atu3608 0.29 -0.3 663,470 + Atu3608 0.32 -0.7 663,492 + Atu3608 0.35 -1.3 663,492 + Atu3608 0.35 +0.7 663,505 - Atu3608 0.37 -0.9 663,529 + Atu3608 0.40 +0.1 663,579 - Atu3608 0.47 -0.3 663,833 + Atu3608 0.82 -0.3 663,912 + -0.9 663,920 - +0.4 663,923 + -2.6 664,011 + +2.6 664,312 + Atu3609 0.29 +2.7 664,331 + Atu3609 0.31 +2.4 664,331 + Atu3609 0.31 +5.1 664,339 - Atu3609 0.32 +0.7 664,386 + Atu3609 0.38 +5.3 664,423 - Atu3609 0.43 +0.7 664,433 - Atu3609 0.44 +2.9 664,649 - Atu3609 0.71 +3.2 664,665 + Atu3609 0.73 +3.7 664,673 - Atu3609 0.74 +2.7 664,957 + Atu3610 0.19 +1.7 664,965 - Atu3610 0.21 +0.3
Or see this region's nucleotide sequence