Strain Fitness in Agrobacterium fabrum C58 around Atu3569

Experiment: Chloramphenicol 12.5 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3568 and Atu3569 are separated by 8 nucleotidesAtu3569 and Atu3570 are separated by 37 nucleotides Atu3568: Atu3568 - hypothetical protein, at 621,079 to 623,007 Atu3568 Atu3569: Atu3569 - hypothetical protein, at 623,016 to 623,444 Atu3569 Atu3570: Atu3570 - hypothetical protein, at 623,482 to 624,678 Atu3570 Position (kb) 623 624Strain fitness (log2 ratio) -2 -1 0 1 2at 622.035 kb on + strand, within Atu3568at 622.036 kb on + strand, within Atu3568at 622.078 kb on + strand, within Atu3568at 622.086 kb on - strand, within Atu3568at 622.110 kb on + strand, within Atu3568at 622.110 kb on + strand, within Atu3568at 622.203 kb on + strand, within Atu3568at 622.221 kb on - strand, within Atu3568at 622.236 kb on + strand, within Atu3568at 622.236 kb on + strand, within Atu3568at 622.242 kb on + strand, within Atu3568at 622.330 kb on + strand, within Atu3568at 622.330 kb on + strand, within Atu3568at 622.330 kb on + strand, within Atu3568at 622.330 kb on + strand, within Atu3568at 622.337 kb on + strand, within Atu3568at 622.338 kb on - strand, within Atu3568at 622.338 kb on - strand, within Atu3568at 622.425 kb on + strand, within Atu3568at 622.494 kb on + strand, within Atu3568at 622.503 kb on - strand, within Atu3568at 622.685 kb on + strand, within Atu3568at 622.693 kb on - strand, within Atu3568at 622.755 kb on + strand, within Atu3568at 622.775 kb on - strand, within Atu3568at 622.947 kb on - strandat 623.134 kb on + strand, within Atu3569at 623.139 kb on + strand, within Atu3569at 623.149 kb on + strand, within Atu3569at 623.177 kb on + strand, within Atu3569at 623.346 kb on - strand, within Atu3569at 623.358 kb on + strand, within Atu3569at 623.366 kb on - strand, within Atu3569at 623.445 kb on + strandat 623.451 kb on - strandat 623.635 kb on + strand, within Atu3570at 623.769 kb on + strand, within Atu3570at 623.793 kb on + strand, within Atu3570at 623.830 kb on + strand, within Atu3570at 623.852 kb on + strand, within Atu3570at 623.887 kb on + strand, within Atu3570at 623.919 kb on - strand, within Atu3570at 624.016 kb on - strand, within Atu3570at 624.214 kb on + strand, within Atu3570at 624.233 kb on + strand, within Atu3570at 624.315 kb on + strand, within Atu3570at 624.315 kb on + strand, within Atu3570

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL
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622,035 + Atu3568 0.50 -0.3
622,036 + Atu3568 0.50 -1.5
622,078 + Atu3568 0.52 +1.7
622,086 - Atu3568 0.52 -0.3
622,110 + Atu3568 0.53 +1.2
622,110 + Atu3568 0.53 -0.7
622,203 + Atu3568 0.58 +1.4
622,221 - Atu3568 0.59 +1.0
622,236 + Atu3568 0.60 -1.0
622,236 + Atu3568 0.60 +0.5
622,242 + Atu3568 0.60 -2.6
622,330 + Atu3568 0.65 -0.1
622,330 + Atu3568 0.65 -0.4
622,330 + Atu3568 0.65 +0.8
622,330 + Atu3568 0.65 -0.0
622,337 + Atu3568 0.65 +0.1
622,338 - Atu3568 0.65 -0.9
622,338 - Atu3568 0.65 -0.3
622,425 + Atu3568 0.70 +0.5
622,494 + Atu3568 0.73 -0.7
622,503 - Atu3568 0.74 -0.4
622,685 + Atu3568 0.83 -0.1
622,693 - Atu3568 0.84 -1.8
622,755 + Atu3568 0.87 -0.3
622,775 - Atu3568 0.88 +0.3
622,947 - +0.4
623,134 + Atu3569 0.28 -1.8
623,139 + Atu3569 0.29 -0.1
623,149 + Atu3569 0.31 -0.8
623,177 + Atu3569 0.38 -1.8
623,346 - Atu3569 0.77 -0.6
623,358 + Atu3569 0.80 -0.1
623,366 - Atu3569 0.82 -2.3
623,445 + -0.0
623,451 - +0.1
623,635 + Atu3570 0.13 +1.2
623,769 + Atu3570 0.24 +0.7
623,793 + Atu3570 0.26 +0.7
623,830 + Atu3570 0.29 +0.2
623,852 + Atu3570 0.31 -0.9
623,887 + Atu3570 0.34 -0.8
623,919 - Atu3570 0.37 +0.7
624,016 - Atu3570 0.45 -0.4
624,214 + Atu3570 0.61 +0.1
624,233 + Atu3570 0.63 +2.7
624,315 + Atu3570 0.70 +0.3
624,315 + Atu3570 0.70 -0.5

Or see this region's nucleotide sequence