Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3548 and Atu3549 overlap by 4 nucleotides Atu3549 and Atu3550 overlap by 8 nucleotides
Atu3548: Atu3548 - glycosyltransferase, at 597,762 to 598,988
Atu3548
Atu3549: Atu3549 - hypothetical protein, at 598,985 to 600,322
Atu3549
Atu3550: Atu3550 - succinoglycan transport protein, at 600,315 to 601,793
Atu3550
Position (kb) 598
599
600
601 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 598.077 kb on + strand, within Atu3548 at 598.085 kb on - strand, within Atu3548 at 598.166 kb on - strand, within Atu3548 at 598.345 kb on + strand, within Atu3548 at 598.413 kb on + strand, within Atu3548 at 598.420 kb on + strand, within Atu3548 at 598.487 kb on - strand, within Atu3548 at 598.494 kb on - strand, within Atu3548 at 598.548 kb on + strand, within Atu3548 at 598.616 kb on - strand, within Atu3548 at 598.675 kb on + strand, within Atu3548 at 598.695 kb on + strand, within Atu3548 at 598.752 kb on - strand, within Atu3548 at 598.774 kb on - strand, within Atu3548 at 598.824 kb on - strand, within Atu3548 at 598.883 kb on + strand at 598.895 kb on + strand at 598.904 kb on - strand at 598.904 kb on - strand at 599.122 kb on - strand, within Atu3549 at 599.175 kb on - strand, within Atu3549 at 599.323 kb on - strand, within Atu3549 at 599.323 kb on - strand, within Atu3549 at 599.328 kb on - strand, within Atu3549 at 599.333 kb on - strand, within Atu3549 at 599.357 kb on - strand, within Atu3549 at 599.358 kb on - strand, within Atu3549 at 599.358 kb on - strand, within Atu3549 at 599.368 kb on - strand, within Atu3549 at 599.375 kb on - strand, within Atu3549 at 599.386 kb on - strand, within Atu3549 at 599.535 kb on + strand, within Atu3549 at 599.535 kb on + strand, within Atu3549 at 599.535 kb on + strand, within Atu3549 at 599.535 kb on + strand, within Atu3549 at 599.543 kb on - strand, within Atu3549 at 599.543 kb on - strand, within Atu3549 at 599.557 kb on + strand, within Atu3549 at 599.557 kb on + strand, within Atu3549 at 599.565 kb on - strand, within Atu3549 at 599.584 kb on - strand, within Atu3549 at 599.609 kb on - strand, within Atu3549 at 599.609 kb on - strand, within Atu3549 at 599.609 kb on - strand, within Atu3549 at 599.609 kb on - strand, within Atu3549 at 599.734 kb on + strand, within Atu3549 at 599.751 kb on + strand, within Atu3549 at 599.751 kb on + strand, within Atu3549 at 599.759 kb on - strand, within Atu3549 at 599.759 kb on - strand, within Atu3549 at 599.781 kb on - strand, within Atu3549 at 599.888 kb on + strand, within Atu3549 at 599.931 kb on + strand, within Atu3549 at 599.990 kb on + strand, within Atu3549 at 600.013 kb on + strand, within Atu3549 at 600.030 kb on + strand, within Atu3549 at 600.368 kb on - strand at 600.426 kb on + strand at 600.526 kb on - strand, within Atu3550 at 600.615 kb on + strand, within Atu3550 at 600.696 kb on + strand, within Atu3550 at 600.696 kb on + strand, within Atu3550 at 600.730 kb on + strand, within Atu3550 at 600.784 kb on + strand, within Atu3550 at 600.823 kb on - strand, within Atu3550 at 600.850 kb on + strand, within Atu3550 at 600.887 kb on + strand, within Atu3550 at 600.900 kb on - strand, within Atu3550 at 600.900 kb on - strand, within Atu3550 at 600.943 kb on - strand, within Atu3550 at 600.956 kb on + strand, within Atu3550 at 600.969 kb on + strand, within Atu3550 at 600.990 kb on + strand, within Atu3550 at 601.053 kb on - strand, within Atu3550 at 601.079 kb on + strand, within Atu3550 at 601.128 kb on + strand, within Atu3550 at 601.142 kb on - strand, within Atu3550 at 601.166 kb on + strand, within Atu3550 at 601.174 kb on - strand, within Atu3550 at 601.194 kb on + strand, within Atu3550 at 601.195 kb on - strand, within Atu3550 at 601.222 kb on + strand, within Atu3550 at 601.269 kb on + strand, within Atu3550 at 601.277 kb on - strand, within Atu3550
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 598,077 + Atu3548 0.26 +0.7 598,085 - Atu3548 0.26 -0.3 598,166 - Atu3548 0.33 +0.2 598,345 + Atu3548 0.48 -0.1 598,413 + Atu3548 0.53 +0.1 598,420 + Atu3548 0.54 -1.1 598,487 - Atu3548 0.59 -1.2 598,494 - Atu3548 0.60 +0.1 598,548 + Atu3548 0.64 -1.3 598,616 - Atu3548 0.70 -1.9 598,675 + Atu3548 0.74 +0.7 598,695 + Atu3548 0.76 -0.9 598,752 - Atu3548 0.81 -0.7 598,774 - Atu3548 0.82 +0.3 598,824 - Atu3548 0.87 +0.6 598,883 + +1.0 598,895 + -0.7 598,904 - +0.2 598,904 - -0.1 599,122 - Atu3549 0.10 -1.2 599,175 - Atu3549 0.14 -0.3 599,323 - Atu3549 0.25 +0.2 599,323 - Atu3549 0.25 -1.1 599,328 - Atu3549 0.26 +0.9 599,333 - Atu3549 0.26 -2.0 599,357 - Atu3549 0.28 -0.3 599,358 - Atu3549 0.28 -0.3 599,358 - Atu3549 0.28 -0.7 599,368 - Atu3549 0.29 -1.3 599,375 - Atu3549 0.29 -3.4 599,386 - Atu3549 0.30 -1.2 599,535 + Atu3549 0.41 -0.4 599,535 + Atu3549 0.41 +0.9 599,535 + Atu3549 0.41 +0.4 599,535 + Atu3549 0.41 +1.7 599,543 - Atu3549 0.42 -2.1 599,543 - Atu3549 0.42 +0.7 599,557 + Atu3549 0.43 -0.7 599,557 + Atu3549 0.43 +0.2 599,565 - Atu3549 0.43 +1.9 599,584 - Atu3549 0.45 -1.0 599,609 - Atu3549 0.47 -1.1 599,609 - Atu3549 0.47 -2.5 599,609 - Atu3549 0.47 +0.1 599,609 - Atu3549 0.47 +0.2 599,734 + Atu3549 0.56 -0.8 599,751 + Atu3549 0.57 -0.3 599,751 + Atu3549 0.57 -0.5 599,759 - Atu3549 0.58 +0.3 599,759 - Atu3549 0.58 -2.0 599,781 - Atu3549 0.59 -0.7 599,888 + Atu3549 0.67 -1.2 599,931 + Atu3549 0.71 +1.3 599,990 + Atu3549 0.75 +0.6 600,013 + Atu3549 0.77 -2.4 600,030 + Atu3549 0.78 -0.5 600,368 - -0.7 600,426 + -0.3 600,526 - Atu3550 0.14 -0.4 600,615 + Atu3550 0.20 +1.5 600,696 + Atu3550 0.26 -0.9 600,696 + Atu3550 0.26 +0.8 600,730 + Atu3550 0.28 +1.4 600,784 + Atu3550 0.32 +0.1 600,823 - Atu3550 0.34 +0.8 600,850 + Atu3550 0.36 -0.8 600,887 + Atu3550 0.39 -0.3 600,900 - Atu3550 0.40 -0.4 600,900 - Atu3550 0.40 +1.7 600,943 - Atu3550 0.42 -0.8 600,956 + Atu3550 0.43 -1.9 600,969 + Atu3550 0.44 +0.2 600,990 + Atu3550 0.46 +0.7 601,053 - Atu3550 0.50 -1.5 601,079 + Atu3550 0.52 +0.4 601,128 + Atu3550 0.55 +2.2 601,142 - Atu3550 0.56 -0.4 601,166 + Atu3550 0.58 +0.1 601,174 - Atu3550 0.58 +1.3 601,194 + Atu3550 0.59 -0.8 601,195 - Atu3550 0.59 -0.3 601,222 + Atu3550 0.61 -0.9 601,269 + Atu3550 0.65 +0.4 601,277 - Atu3550 0.65 -2.7
Or see this region's nucleotide sequence