Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3455 and Atu3456 are separated by 217 nucleotides Atu3456 and Atu3457 overlap by 1 nucleotides Atu3457 and Atu3458 are separated by 4 nucleotides Atu3458 and Atu3459 overlap by 1 nucleotides
Atu3455: Atu3455 - oligopeptide ABC transporter substrate-binding protein, at 502,841 to 504,439
Atu3455
Atu3456: Atu3456 - ABC transporter permease, at 504,657 to 505,415
Atu3456
Atu3457: Atu3457 - ABC transporter permease, at 505,415 to 506,251
Atu3457
Atu3458: Atu3458 - ABC transporter permease, at 506,256 to 507,143
Atu3458
Atu3459: Atu3459 - ABC transporter permease, at 507,143 to 508,165
Atu3459
Position (kb) 505
506
507 Strain fitness (log2 ratio) -2
-1
0
1
2 at 504.440 kb on + strand at 504.449 kb on - strand at 504.500 kb on + strand at 504.542 kb on + strand at 504.562 kb on - strand at 504.810 kb on - strand, within Atu3456 at 504.820 kb on - strand, within Atu3456 at 504.833 kb on + strand, within Atu3456 at 504.938 kb on + strand, within Atu3456 at 505.008 kb on + strand, within Atu3456 at 505.053 kb on - strand, within Atu3456 at 505.153 kb on - strand, within Atu3456 at 505.187 kb on + strand, within Atu3456 at 505.212 kb on - strand, within Atu3456 at 505.379 kb on - strand at 505.434 kb on - strand at 505.435 kb on + strand at 505.448 kb on + strand at 505.676 kb on + strand, within Atu3457 at 505.788 kb on - strand, within Atu3457 at 505.912 kb on - strand, within Atu3457 at 505.932 kb on - strand, within Atu3457 at 505.932 kb on - strand, within Atu3457 at 505.955 kb on - strand, within Atu3457 at 506.009 kb on - strand, within Atu3457 at 506.010 kb on - strand, within Atu3457 at 506.114 kb on + strand, within Atu3457 at 506.114 kb on + strand, within Atu3457 at 506.160 kb on - strand, within Atu3457 at 506.185 kb on + strand at 506.221 kb on + strand at 506.252 kb on + strand at 506.324 kb on + strand at 506.379 kb on - strand, within Atu3458 at 506.388 kb on - strand, within Atu3458 at 506.398 kb on - strand, within Atu3458 at 506.482 kb on + strand, within Atu3458 at 506.558 kb on - strand, within Atu3458 at 506.563 kb on - strand, within Atu3458 at 506.563 kb on - strand, within Atu3458 at 506.567 kb on + strand, within Atu3458 at 506.574 kb on - strand, within Atu3458 at 506.574 kb on - strand, within Atu3458 at 506.597 kb on + strand, within Atu3458 at 506.616 kb on - strand, within Atu3458 at 506.616 kb on - strand, within Atu3458 at 506.653 kb on - strand, within Atu3458 at 506.684 kb on + strand, within Atu3458 at 506.687 kb on - strand, within Atu3458 at 506.692 kb on - strand, within Atu3458 at 506.720 kb on + strand, within Atu3458 at 506.853 kb on + strand, within Atu3458 at 506.883 kb on - strand, within Atu3458 at 507.228 kb on + strand at 507.238 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 504,440 + +0.1 504,449 - +0.1 504,500 + -0.3 504,542 + +0.5 504,562 - +0.6 504,810 - Atu3456 0.20 +0.1 504,820 - Atu3456 0.21 +0.4 504,833 + Atu3456 0.23 +0.1 504,938 + Atu3456 0.37 -1.5 505,008 + Atu3456 0.46 -1.7 505,053 - Atu3456 0.52 +0.4 505,153 - Atu3456 0.65 +0.2 505,187 + Atu3456 0.70 +0.4 505,212 - Atu3456 0.73 +0.2 505,379 - -1.5 505,434 - -1.2 505,435 + +1.7 505,448 + -0.3 505,676 + Atu3457 0.31 +1.5 505,788 - Atu3457 0.45 -0.3 505,912 - Atu3457 0.59 +1.2 505,932 - Atu3457 0.62 +0.1 505,932 - Atu3457 0.62 -0.0 505,955 - Atu3457 0.65 +1.7 506,009 - Atu3457 0.71 +0.7 506,010 - Atu3457 0.71 -0.3 506,114 + Atu3457 0.84 -0.3 506,114 + Atu3457 0.84 -2.5 506,160 - Atu3457 0.89 -0.5 506,185 + +0.1 506,221 + +0.1 506,252 + -0.3 506,324 + -1.3 506,379 - Atu3458 0.14 -0.9 506,388 - Atu3458 0.15 +0.8 506,398 - Atu3458 0.16 +1.1 506,482 + Atu3458 0.25 +0.1 506,558 - Atu3458 0.34 +1.7 506,563 - Atu3458 0.35 -1.0 506,563 - Atu3458 0.35 -0.1 506,567 + Atu3458 0.35 -0.5 506,574 - Atu3458 0.36 +0.7 506,574 - Atu3458 0.36 -0.2 506,597 + Atu3458 0.38 -1.6 506,616 - Atu3458 0.41 +0.1 506,616 - Atu3458 0.41 +1.0 506,653 - Atu3458 0.45 -1.2 506,684 + Atu3458 0.48 -0.6 506,687 - Atu3458 0.49 -1.3 506,692 - Atu3458 0.49 -0.6 506,720 + Atu3458 0.52 +0.1 506,853 + Atu3458 0.67 +0.6 506,883 - Atu3458 0.71 -0.5 507,228 + +2.3 507,238 - -1.7
Or see this region's nucleotide sequence