Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3448 and Atu3450 are separated by 347 nucleotides Atu3450 and Atu3451 are separated by 86 nucleotides
Atu3448: Atu3448 - dibenzothiophene desulfurization protein B, at 496,728 to 497,780
Atu3448
Atu3450: Atu3450 - nitrilotriacetate monooxygenase, at 498,128 to 499,435
Atu3450
Atu3451: Atu3451 - monooxygenase, at 499,522 to 500,550
Atu3451
Position (kb) 498
499
500 Strain fitness (log2 ratio) -2
-1
0
1
2 at 497.198 kb on - strand, within Atu3448 at 497.494 kb on + strand, within Atu3448 at 497.494 kb on + strand, within Atu3448 at 497.631 kb on - strand, within Atu3448 at 497.636 kb on - strand, within Atu3448 at 497.719 kb on + strand at 497.728 kb on + strand at 497.738 kb on - strand at 497.741 kb on - strand at 497.746 kb on - strand at 497.750 kb on + strand at 497.765 kb on + strand at 497.825 kb on - strand at 498.208 kb on - strand at 498.314 kb on + strand, within Atu3450 at 498.317 kb on - strand, within Atu3450 at 498.403 kb on - strand, within Atu3450 at 498.572 kb on + strand, within Atu3450 at 498.937 kb on - strand, within Atu3450 at 498.937 kb on - strand, within Atu3450 at 498.991 kb on + strand, within Atu3450 at 499.036 kb on - strand, within Atu3450 at 499.088 kb on + strand, within Atu3450 at 499.154 kb on - strand, within Atu3450 at 499.187 kb on + strand, within Atu3450 at 499.205 kb on - strand, within Atu3450 at 499.205 kb on - strand, within Atu3450 at 499.280 kb on + strand, within Atu3450 at 499.287 kb on + strand, within Atu3450 at 499.287 kb on + strand, within Atu3450 at 499.415 kb on + strand at 499.415 kb on + strand at 499.420 kb on + strand at 499.420 kb on + strand at 499.423 kb on - strand at 499.428 kb on - strand at 499.475 kb on - strand at 499.671 kb on + strand, within Atu3451 at 499.796 kb on - strand, within Atu3451 at 499.806 kb on - strand, within Atu3451 at 500.094 kb on - strand, within Atu3451 at 500.155 kb on + strand, within Atu3451 at 500.187 kb on + strand, within Atu3451 at 500.207 kb on - strand, within Atu3451 at 500.234 kb on + strand, within Atu3451 at 500.248 kb on + strand, within Atu3451 at 500.256 kb on - strand, within Atu3451 at 500.340 kb on + strand, within Atu3451 at 500.404 kb on + strand, within Atu3451
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 497,198 - Atu3448 0.45 -0.0 497,494 + Atu3448 0.73 -2.5 497,494 + Atu3448 0.73 +0.2 497,631 - Atu3448 0.86 +0.1 497,636 - Atu3448 0.86 -0.3 497,719 + -0.0 497,728 + +0.2 497,738 - -0.3 497,741 - +0.4 497,746 - +0.7 497,750 + +0.1 497,765 + -0.6 497,825 - -0.3 498,208 - +0.4 498,314 + Atu3450 0.14 +0.8 498,317 - Atu3450 0.14 -0.2 498,403 - Atu3450 0.21 +0.5 498,572 + Atu3450 0.34 +0.4 498,937 - Atu3450 0.62 -2.6 498,937 - Atu3450 0.62 +1.2 498,991 + Atu3450 0.66 +0.2 499,036 - Atu3450 0.69 +0.3 499,088 + Atu3450 0.73 -0.0 499,154 - Atu3450 0.78 +1.8 499,187 + Atu3450 0.81 +0.2 499,205 - Atu3450 0.82 -1.7 499,205 - Atu3450 0.82 -0.4 499,280 + Atu3450 0.88 +0.4 499,287 + Atu3450 0.89 -1.3 499,287 + Atu3450 0.89 -0.9 499,415 + -0.2 499,415 + -0.5 499,420 + -1.5 499,420 + +0.8 499,423 - +0.2 499,428 - -0.3 499,475 - -1.3 499,671 + Atu3451 0.14 +1.3 499,796 - Atu3451 0.27 +2.0 499,806 - Atu3451 0.28 -1.3 500,094 - Atu3451 0.56 -0.3 500,155 + Atu3451 0.62 -1.6 500,187 + Atu3451 0.65 -0.5 500,207 - Atu3451 0.67 -0.1 500,234 + Atu3451 0.69 +2.3 500,248 + Atu3451 0.71 +0.4 500,256 - Atu3451 0.71 -0.7 500,340 + Atu3451 0.79 +1.1 500,404 + Atu3451 0.86 +0.4
Or see this region's nucleotide sequence