Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3442 and Atu3443 are separated by 42 nucleotides Atu3443 and Atu3444 are separated by 222 nucleotides Atu3444 and Atu3445 overlap by 8 nucleotides
Atu3442: Atu3442 - oligopeptide ABC transporter substrate-binding protein, at 489,440 to 491,035
Atu3442
Atu3443: Atu3443 - hypothetical protein, at 491,078 to 491,527
Atu3443
Atu3444: Atu3444 - oligopeptide ABC transporter substrate-binding protein, at 491,750 to 493,381
Atu3444
Atu3445: Atu3445 - hippurate hydrolase, at 493,374 to 494,573
Atu3445
Position (kb) 491
492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 490.758 kb on - strand, within Atu3442 at 490.925 kb on - strand at 491.030 kb on + strand at 491.334 kb on - strand, within Atu3443 at 491.362 kb on + strand, within Atu3443 at 491.403 kb on + strand, within Atu3443 at 491.444 kb on - strand, within Atu3443 at 491.639 kb on + strand at 491.703 kb on - strand at 491.705 kb on + strand at 491.713 kb on + strand at 491.713 kb on + strand at 491.713 kb on + strand at 491.713 kb on + strand at 491.721 kb on - strand at 491.721 kb on - strand at 491.721 kb on - strand at 491.767 kb on - strand at 491.785 kb on + strand at 491.793 kb on - strand at 491.807 kb on - strand at 491.833 kb on + strand at 491.898 kb on + strand at 491.935 kb on + strand, within Atu3444 at 491.996 kb on - strand, within Atu3444 at 492.032 kb on - strand, within Atu3444 at 492.103 kb on + strand, within Atu3444 at 492.105 kb on + strand, within Atu3444 at 492.105 kb on + strand, within Atu3444 at 492.228 kb on - strand, within Atu3444 at 492.284 kb on - strand, within Atu3444 at 492.305 kb on - strand, within Atu3444 at 492.305 kb on - strand, within Atu3444 at 492.307 kb on + strand, within Atu3444 at 492.307 kb on + strand, within Atu3444 at 492.328 kb on - strand, within Atu3444 at 492.328 kb on - strand, within Atu3444 at 492.328 kb on - strand, within Atu3444 at 492.337 kb on + strand, within Atu3444 at 492.429 kb on + strand, within Atu3444 at 492.442 kb on - strand, within Atu3444 at 492.458 kb on - strand, within Atu3444 at 492.471 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.530 kb on - strand, within Atu3444 at 492.530 kb on - strand, within Atu3444 at 492.530 kb on - strand, within Atu3444 at 492.530 kb on - strand, within Atu3444 at 492.573 kb on + strand, within Atu3444 at 492.573 kb on + strand, within Atu3444 at 492.573 kb on + strand, within Atu3444 at 492.575 kb on + strand, within Atu3444 at 492.581 kb on + strand, within Atu3444 at 492.754 kb on + strand, within Atu3444 at 492.892 kb on - strand, within Atu3444 at 492.955 kb on + strand, within Atu3444 at 492.979 kb on - strand, within Atu3444 at 492.997 kb on + strand, within Atu3444 at 493.040 kb on - strand, within Atu3444 at 493.042 kb on + strand, within Atu3444 at 493.050 kb on + strand, within Atu3444 at 493.050 kb on + strand, within Atu3444 at 493.050 kb on - strand, within Atu3444 at 493.057 kb on - strand, within Atu3444 at 493.112 kb on - strand, within Atu3444 at 493.153 kb on + strand, within Atu3444 at 493.297 kb on + strand at 493.389 kb on - strand at 493.393 kb on + strand at 493.477 kb on + strand at 493.622 kb on - strand, within Atu3445 at 493.638 kb on + strand, within Atu3445 at 493.683 kb on + strand, within Atu3445 at 493.766 kb on - strand, within Atu3445 at 493.856 kb on + strand, within Atu3445 at 493.887 kb on - strand, within Atu3445 at 493.896 kb on - strand, within Atu3445 at 493.954 kb on + strand, within Atu3445 at 493.962 kb on - strand, within Atu3445 at 493.997 kb on + strand, within Atu3445 at 494.039 kb on + strand, within Atu3445 at 494.047 kb on - strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.135 kb on - strand, within Atu3445 at 494.207 kb on + strand, within Atu3445 at 494.225 kb on - strand, within Atu3445 at 494.230 kb on - strand, within Atu3445 at 494.244 kb on - strand, within Atu3445 at 494.271 kb on - strand, within Atu3445 at 494.374 kb on - strand, within Atu3445
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 490,758 - Atu3442 0.83 -1.5 490,925 - +0.7 491,030 + +0.0 491,334 - Atu3443 0.57 -0.2 491,362 + Atu3443 0.63 +0.7 491,403 + Atu3443 0.72 -0.1 491,444 - Atu3443 0.81 +1.7 491,639 + +0.2 491,703 - +0.4 491,705 + +1.7 491,713 + -1.0 491,713 + -1.9 491,713 + -0.3 491,713 + -0.1 491,721 - +0.1 491,721 - +0.7 491,721 - -0.3 491,767 - -0.3 491,785 + +0.1 491,793 - -0.1 491,807 - -0.4 491,833 + -1.1 491,898 + -0.3 491,935 + Atu3444 0.11 +1.2 491,996 - Atu3444 0.15 -0.2 492,032 - Atu3444 0.17 -1.4 492,103 + Atu3444 0.22 +0.9 492,105 + Atu3444 0.22 -0.1 492,105 + Atu3444 0.22 -1.1 492,228 - Atu3444 0.29 -0.3 492,284 - Atu3444 0.33 -0.5 492,305 - Atu3444 0.34 -2.4 492,305 - Atu3444 0.34 +0.0 492,307 + Atu3444 0.34 +0.5 492,307 + Atu3444 0.34 +1.5 492,328 - Atu3444 0.35 -0.7 492,328 - Atu3444 0.35 -0.5 492,328 - Atu3444 0.35 -0.3 492,337 + Atu3444 0.36 -0.3 492,429 + Atu3444 0.42 +1.1 492,442 - Atu3444 0.42 -0.3 492,458 - Atu3444 0.43 -0.1 492,471 + Atu3444 0.44 -0.1 492,522 + Atu3444 0.47 -0.2 492,522 + Atu3444 0.47 +0.7 492,522 + Atu3444 0.47 -0.0 492,522 + Atu3444 0.47 +0.4 492,522 + Atu3444 0.47 +1.9 492,530 - Atu3444 0.48 -0.3 492,530 - Atu3444 0.48 +1.7 492,530 - Atu3444 0.48 +0.5 492,530 - Atu3444 0.48 +1.7 492,573 + Atu3444 0.50 +0.6 492,573 + Atu3444 0.50 -0.3 492,573 + Atu3444 0.50 -1.7 492,575 + Atu3444 0.51 +0.8 492,581 + Atu3444 0.51 -0.4 492,754 + Atu3444 0.62 -0.6 492,892 - Atu3444 0.70 +0.1 492,955 + Atu3444 0.74 -0.1 492,979 - Atu3444 0.75 +1.8 492,997 + Atu3444 0.76 -1.0 493,040 - Atu3444 0.79 -0.2 493,042 + Atu3444 0.79 -0.3 493,050 + Atu3444 0.80 +3.5 493,050 + Atu3444 0.80 -3.0 493,050 - Atu3444 0.80 +0.7 493,057 - Atu3444 0.80 -1.0 493,112 - Atu3444 0.83 +0.5 493,153 + Atu3444 0.86 -0.4 493,297 + +0.6 493,389 - -0.9 493,393 + +0.5 493,477 + +2.1 493,622 - Atu3445 0.21 +0.4 493,638 + Atu3445 0.22 -1.7 493,683 + Atu3445 0.26 +0.1 493,766 - Atu3445 0.33 +0.4 493,856 + Atu3445 0.40 -0.6 493,887 - Atu3445 0.43 +1.1 493,896 - Atu3445 0.43 +0.6 493,954 + Atu3445 0.48 -1.1 493,962 - Atu3445 0.49 +0.4 493,997 + Atu3445 0.52 +0.3 494,039 + Atu3445 0.55 +2.4 494,047 - Atu3445 0.56 -0.9 494,118 + Atu3445 0.62 -0.0 494,118 + Atu3445 0.62 -2.2 494,118 + Atu3445 0.62 -0.4 494,118 + Atu3445 0.62 -0.2 494,118 + Atu3445 0.62 -0.6 494,135 - Atu3445 0.63 +0.5 494,207 + Atu3445 0.69 -0.9 494,225 - Atu3445 0.71 +1.1 494,230 - Atu3445 0.71 +1.2 494,244 - Atu3445 0.72 -0.2 494,271 - Atu3445 0.75 -0.8 494,374 - Atu3445 0.83 -0.0
Or see this region's nucleotide sequence