Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3435 and Atu3436 overlap by 4 nucleotides Atu3436 and Atu3437 overlap by 23 nucleotides Atu3437 and Atu3438 are separated by 18 nucleotides
Atu3435: Atu3435 - oligopeptide ABC transporter permease, at 481,741 to 482,736
Atu3435
Atu3436: Atu3436 - oligopeptide ABC transporter ATPase, at 482,733 to 483,731
Atu3436
Atu3437: Atu3437 - oligopeptide ABC transporter ATPase, at 483,709 to 484,644
Atu3437
Atu3438: Atu3438 - oxidoreductase, at 484,663 to 485,718
Atu3438
Position (kb) 483
484
485 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 482.797 kb on - strand at 482.836 kb on + strand, within Atu3436 at 482.880 kb on - strand, within Atu3436 at 482.917 kb on + strand, within Atu3436 at 482.925 kb on - strand, within Atu3436 at 483.061 kb on - strand, within Atu3436 at 483.209 kb on - strand, within Atu3436 at 483.291 kb on - strand, within Atu3436 at 483.397 kb on - strand, within Atu3436 at 483.453 kb on - strand, within Atu3436 at 483.454 kb on - strand, within Atu3436 at 483.512 kb on + strand, within Atu3436 at 483.520 kb on - strand, within Atu3436 at 483.562 kb on + strand, within Atu3436 at 483.598 kb on + strand, within Atu3436 at 483.606 kb on - strand, within Atu3436 at 483.643 kb on + strand at 483.719 kb on + strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.910 kb on - strand, within Atu3437 at 483.919 kb on - strand, within Atu3437 at 483.942 kb on + strand, within Atu3437 at 484.009 kb on - strand, within Atu3437 at 484.060 kb on - strand, within Atu3437 at 484.104 kb on + strand, within Atu3437 at 484.130 kb on + strand, within Atu3437 at 484.182 kb on - strand, within Atu3437 at 484.319 kb on + strand, within Atu3437 at 484.319 kb on + strand, within Atu3437 at 484.325 kb on + strand, within Atu3437 at 484.400 kb on + strand, within Atu3437 at 484.407 kb on + strand, within Atu3437 at 484.407 kb on + strand, within Atu3437 at 484.407 kb on + strand, within Atu3437 at 484.415 kb on - strand, within Atu3437 at 484.428 kb on + strand, within Atu3437 at 484.428 kb on + strand, within Atu3437 at 484.428 kb on + strand, within Atu3437 at 484.436 kb on - strand, within Atu3437 at 484.436 kb on - strand, within Atu3437 at 484.436 kb on - strand, within Atu3437 at 484.437 kb on - strand, within Atu3437 at 484.437 kb on - strand, within Atu3437 at 484.600 kb on + strand at 484.793 kb on + strand, within Atu3438 at 484.800 kb on - strand, within Atu3438 at 484.848 kb on - strand, within Atu3438 at 484.868 kb on - strand, within Atu3438 at 484.921 kb on + strand, within Atu3438 at 484.956 kb on + strand, within Atu3438 at 485.125 kb on - strand, within Atu3438 at 485.160 kb on + strand, within Atu3438 at 485.240 kb on - strand, within Atu3438 at 485.276 kb on - strand, within Atu3438 at 485.276 kb on - strand, within Atu3438 at 485.293 kb on + strand, within Atu3438 at 485.301 kb on - strand, within Atu3438 at 485.428 kb on + strand, within Atu3438 at 485.470 kb on + strand, within Atu3438 at 485.633 kb on + strand at 485.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 482,797 - +1.3 482,836 + Atu3436 0.10 +1.1 482,880 - Atu3436 0.15 +1.6 482,917 + Atu3436 0.18 +0.5 482,925 - Atu3436 0.19 +0.7 483,061 - Atu3436 0.33 -1.5 483,209 - Atu3436 0.48 -0.2 483,291 - Atu3436 0.56 -1.5 483,397 - Atu3436 0.66 +1.1 483,453 - Atu3436 0.72 +0.5 483,454 - Atu3436 0.72 +0.4 483,512 + Atu3436 0.78 -0.2 483,520 - Atu3436 0.79 -0.1 483,562 + Atu3436 0.83 +0.8 483,598 + Atu3436 0.87 +0.7 483,606 - Atu3436 0.87 +0.7 483,643 + -0.4 483,719 + -0.6 483,802 - +3.3 483,802 - -0.9 483,802 - -0.7 483,802 - -1.6 483,802 - +0.4 483,910 - Atu3437 0.21 -1.5 483,919 - Atu3437 0.22 -0.1 483,942 + Atu3437 0.25 +0.1 484,009 - Atu3437 0.32 +3.0 484,060 - Atu3437 0.38 +1.1 484,104 + Atu3437 0.42 +1.7 484,130 + Atu3437 0.45 +0.7 484,182 - Atu3437 0.51 +1.7 484,319 + Atu3437 0.65 -0.3 484,319 + Atu3437 0.65 -1.2 484,325 + Atu3437 0.66 -0.3 484,400 + Atu3437 0.74 +0.9 484,407 + Atu3437 0.75 +1.2 484,407 + Atu3437 0.75 -2.1 484,407 + Atu3437 0.75 +0.1 484,415 - Atu3437 0.75 -3.1 484,428 + Atu3437 0.77 +1.2 484,428 + Atu3437 0.77 +0.6 484,428 + Atu3437 0.77 +0.0 484,436 - Atu3437 0.78 +0.1 484,436 - Atu3437 0.78 -0.0 484,436 - Atu3437 0.78 +0.9 484,437 - Atu3437 0.78 +1.9 484,437 - Atu3437 0.78 +0.6 484,600 + -0.0 484,793 + Atu3438 0.12 +0.4 484,800 - Atu3438 0.13 -1.3 484,848 - Atu3438 0.18 -1.3 484,868 - Atu3438 0.19 -0.9 484,921 + Atu3438 0.24 -2.0 484,956 + Atu3438 0.28 -0.7 485,125 - Atu3438 0.44 -1.6 485,160 + Atu3438 0.47 -1.3 485,240 - Atu3438 0.55 +0.2 485,276 - Atu3438 0.58 -0.4 485,276 - Atu3438 0.58 -0.3 485,293 + Atu3438 0.60 -0.6 485,301 - Atu3438 0.60 -1.3 485,428 + Atu3438 0.72 -0.9 485,470 + Atu3438 0.76 +0.1 485,633 + -0.3 485,640 - -0.7
Or see this region's nucleotide sequence