Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3427 and Atu3428 are separated by 52 nucleotides Atu3428 and Atu3429 are separated by 201 nucleotides Atu3429 and Atu3430 overlap by 4 nucleotides
Atu3427: Atu3427 - hypothetical protein, at 474,100 to 474,417
Atu3427
Atu3428: Atu3428 - hypothetical protein, at 474,470 to 475,087
Atu3428
Atu3429: Atu3429 - hypothetical protein, at 475,289 to 475,477
Atu3429
Atu3430: Atu3430 - alkanesulfonate monooxygenase, at 475,474 to 476,544
Atu3430
Position (kb) 475
476 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 474.290 kb on - strand, within Atu3427 at 474.305 kb on - strand, within Atu3427 at 474.352 kb on + strand, within Atu3427 at 474.443 kb on + strand at 474.489 kb on + strand at 474.537 kb on - strand, within Atu3428 at 474.572 kb on + strand, within Atu3428 at 474.628 kb on + strand, within Atu3428 at 474.724 kb on + strand, within Atu3428 at 474.777 kb on + strand, within Atu3428 at 474.792 kb on + strand, within Atu3428 at 474.816 kb on + strand, within Atu3428 at 474.834 kb on + strand, within Atu3428 at 474.880 kb on - strand, within Atu3428 at 474.946 kb on + strand, within Atu3428 at 475.053 kb on - strand at 475.063 kb on - strand at 475.088 kb on - strand at 475.092 kb on + strand at 475.433 kb on + strand, within Atu3429 at 475.471 kb on + strand at 475.515 kb on + strand at 475.621 kb on + strand, within Atu3430 at 475.653 kb on - strand, within Atu3430 at 475.664 kb on + strand, within Atu3430 at 475.683 kb on + strand, within Atu3430 at 475.732 kb on - strand, within Atu3430 at 475.732 kb on - strand, within Atu3430 at 475.857 kb on + strand, within Atu3430 at 475.859 kb on - strand, within Atu3430 at 475.899 kb on + strand, within Atu3430 at 475.899 kb on + strand, within Atu3430 at 475.899 kb on + strand, within Atu3430 at 475.907 kb on - strand, within Atu3430 at 475.907 kb on - strand, within Atu3430 at 475.907 kb on - strand, within Atu3430 at 475.907 kb on - strand, within Atu3430 at 475.931 kb on - strand, within Atu3430 at 475.960 kb on + strand, within Atu3430 at 476.043 kb on - strand, within Atu3430 at 476.073 kb on - strand, within Atu3430 at 476.211 kb on - strand, within Atu3430 at 476.348 kb on - strand, within Atu3430
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 474,290 - Atu3427 0.60 +0.4 474,305 - Atu3427 0.64 +0.3 474,352 + Atu3427 0.79 -2.1 474,443 + +0.1 474,489 + +0.1 474,537 - Atu3428 0.11 +0.1 474,572 + Atu3428 0.17 +1.7 474,628 + Atu3428 0.26 -2.5 474,724 + Atu3428 0.41 +1.5 474,777 + Atu3428 0.50 -2.1 474,792 + Atu3428 0.52 -1.3 474,816 + Atu3428 0.56 +0.3 474,834 + Atu3428 0.59 +1.4 474,880 - Atu3428 0.66 -1.6 474,946 + Atu3428 0.77 +0.1 475,053 - +2.2 475,063 - -1.9 475,088 - -0.3 475,092 + -0.3 475,433 + Atu3429 0.76 -1.2 475,471 + -0.3 475,515 + -0.9 475,621 + Atu3430 0.14 -1.3 475,653 - Atu3430 0.17 -0.3 475,664 + Atu3430 0.18 -1.1 475,683 + Atu3430 0.20 -0.4 475,732 - Atu3430 0.24 +0.2 475,732 - Atu3430 0.24 -0.4 475,857 + Atu3430 0.36 -0.7 475,859 - Atu3430 0.36 -0.9 475,899 + Atu3430 0.40 +1.7 475,899 + Atu3430 0.40 -0.6 475,899 + Atu3430 0.40 -0.3 475,907 - Atu3430 0.40 -2.8 475,907 - Atu3430 0.40 +0.2 475,907 - Atu3430 0.40 +0.4 475,907 - Atu3430 0.40 +0.7 475,931 - Atu3430 0.43 -0.8 475,960 + Atu3430 0.45 -0.6 476,043 - Atu3430 0.53 +1.2 476,073 - Atu3430 0.56 +0.6 476,211 - Atu3430 0.69 -0.9 476,348 - Atu3430 0.82 +0.1
Or see this region's nucleotide sequence