Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3274 and Atu3275 overlap by 4 nucleotides Atu3275 and Atu3276 overlap by 1 nucleotides
Atu3274: Atu3274 - AcrB/AcrD/AcrF family protein, at 294,591 to 297,731
Atu3274
Atu3275: Atu3275 - invasion associated protein B, at 297,728 to 298,306
Atu3275
Atu3276: Atu3276 - hypothetical protein, at 298,306 to 302,331
Atu3276
Position (kb) 297
298
299 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 296.767 kb on - strand, within Atu3274 at 296.913 kb on + strand, within Atu3274 at 296.913 kb on + strand, within Atu3274 at 296.948 kb on - strand, within Atu3274 at 296.990 kb on - strand, within Atu3274 at 297.015 kb on - strand, within Atu3274 at 297.025 kb on - strand, within Atu3274 at 297.052 kb on + strand, within Atu3274 at 297.070 kb on - strand, within Atu3274 at 297.070 kb on - strand, within Atu3274 at 297.130 kb on + strand, within Atu3274 at 297.340 kb on - strand, within Atu3274 at 297.383 kb on - strand, within Atu3274 at 297.494 kb on - strand at 297.517 kb on + strand at 297.517 kb on + strand at 297.597 kb on + strand at 297.640 kb on - strand at 297.671 kb on + strand at 297.676 kb on + strand at 297.801 kb on - strand, within Atu3275 at 297.832 kb on - strand, within Atu3275 at 297.880 kb on + strand, within Atu3275 at 297.901 kb on + strand, within Atu3275 at 297.906 kb on + strand, within Atu3275 at 297.914 kb on - strand, within Atu3275 at 297.919 kb on - strand, within Atu3275 at 297.956 kb on - strand, within Atu3275 at 298.005 kb on - strand, within Atu3275 at 298.005 kb on - strand, within Atu3275 at 298.082 kb on - strand, within Atu3275 at 298.174 kb on - strand, within Atu3275 at 298.242 kb on - strand, within Atu3275 at 298.337 kb on + strand at 298.404 kb on + strand at 298.406 kb on + strand at 298.424 kb on - strand at 298.454 kb on - strand at 298.504 kb on - strand at 298.529 kb on + strand at 298.626 kb on + strand at 298.665 kb on + strand at 298.698 kb on - strand at 298.724 kb on - strand, within Atu3276 at 298.757 kb on + strand, within Atu3276 at 298.774 kb on + strand, within Atu3276 at 298.811 kb on - strand, within Atu3276 at 298.922 kb on - strand, within Atu3276 at 298.922 kb on - strand, within Atu3276 at 298.956 kb on + strand, within Atu3276 at 298.956 kb on + strand, within Atu3276 at 298.972 kb on + strand, within Atu3276 at 299.078 kb on + strand, within Atu3276 at 299.157 kb on - strand, within Atu3276 at 299.205 kb on + strand, within Atu3276 at 299.243 kb on - strand, within Atu3276 at 299.268 kb on - strand, within Atu3276
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 296,767 - Atu3274 0.69 -0.2 296,913 + Atu3274 0.74 -0.2 296,913 + Atu3274 0.74 -2.5 296,948 - Atu3274 0.75 -1.5 296,990 - Atu3274 0.76 +0.7 297,015 - Atu3274 0.77 +0.3 297,025 - Atu3274 0.77 -1.0 297,052 + Atu3274 0.78 -0.0 297,070 - Atu3274 0.79 +0.8 297,070 - Atu3274 0.79 -0.4 297,130 + Atu3274 0.81 -0.6 297,340 - Atu3274 0.88 +0.7 297,383 - Atu3274 0.89 -2.0 297,494 - +1.2 297,517 + +1.4 297,517 + -0.8 297,597 + +0.2 297,640 - +0.8 297,671 + +1.5 297,676 + +0.1 297,801 - Atu3275 0.13 +0.4 297,832 - Atu3275 0.18 +0.1 297,880 + Atu3275 0.26 +1.2 297,901 + Atu3275 0.30 +0.1 297,906 + Atu3275 0.31 -1.2 297,914 - Atu3275 0.32 +2.6 297,919 - Atu3275 0.33 +0.5 297,956 - Atu3275 0.39 +0.8 298,005 - Atu3275 0.48 +0.8 298,005 - Atu3275 0.48 +1.2 298,082 - Atu3275 0.61 -0.4 298,174 - Atu3275 0.77 +0.2 298,242 - Atu3275 0.89 +1.5 298,337 + +0.8 298,404 + -0.3 298,406 + -0.2 298,424 - +0.7 298,454 - +1.1 298,504 - -0.1 298,529 + +2.7 298,626 + +3.4 298,665 + -0.1 298,698 - -2.1 298,724 - Atu3276 0.10 -0.7 298,757 + Atu3276 0.11 +0.7 298,774 + Atu3276 0.12 -0.4 298,811 - Atu3276 0.13 -0.3 298,922 - Atu3276 0.15 +0.8 298,922 - Atu3276 0.15 -0.6 298,956 + Atu3276 0.16 +0.6 298,956 + Atu3276 0.16 -0.6 298,972 + Atu3276 0.17 +0.3 299,078 + Atu3276 0.19 +0.7 299,157 - Atu3276 0.21 -0.1 299,205 + Atu3276 0.22 +0.1 299,243 - Atu3276 0.23 +0.5 299,268 - Atu3276 0.24 +1.2
Or see this region's nucleotide sequence