Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3138 and Atu3139 overlap by 4 nucleotides Atu3139 and Atu3140 are separated by 25 nucleotides
Atu3138: Atu3138 - hypothetical protein, at 146,107 to 146,985
Atu3138
Atu3139: Atu3139 - hypothetical protein, at 146,982 to 148,118
Atu3139
Atu3140: Atu3140 - 5-dehydro-4-deoxyglucarate dehydratase, at 148,144 to 149,055
Atu3140
Position (kb) 146
147
148
149 Strain fitness (log2 ratio) -2
-1
0
1
2 at 145.989 kb on + strand at 146.030 kb on + strand at 146.338 kb on + strand, within Atu3138 at 146.414 kb on - strand, within Atu3138 at 146.531 kb on + strand, within Atu3138 at 146.766 kb on + strand, within Atu3138 at 146.766 kb on + strand, within Atu3138 at 146.779 kb on - strand, within Atu3138 at 146.789 kb on - strand, within Atu3138 at 146.804 kb on - strand, within Atu3138 at 146.804 kb on - strand, within Atu3138 at 146.862 kb on + strand, within Atu3138 at 146.870 kb on - strand, within Atu3138 at 146.952 kb on - strand at 146.995 kb on + strand at 147.077 kb on - strand at 147.113 kb on + strand, within Atu3139 at 147.121 kb on - strand, within Atu3139 at 147.121 kb on - strand, within Atu3139 at 147.182 kb on - strand, within Atu3139 at 147.231 kb on - strand, within Atu3139 at 147.520 kb on + strand, within Atu3139 at 147.526 kb on - strand, within Atu3139 at 147.528 kb on - strand, within Atu3139 at 147.528 kb on - strand, within Atu3139 at 147.528 kb on - strand, within Atu3139 at 147.554 kb on + strand, within Atu3139 at 147.711 kb on - strand, within Atu3139 at 147.720 kb on + strand, within Atu3139 at 147.769 kb on - strand, within Atu3139 at 147.786 kb on - strand, within Atu3139 at 147.792 kb on - strand, within Atu3139 at 147.822 kb on + strand, within Atu3139 at 147.822 kb on + strand, within Atu3139 at 147.822 kb on + strand, within Atu3139 at 147.844 kb on - strand, within Atu3139 at 147.859 kb on - strand, within Atu3139 at 147.866 kb on + strand, within Atu3139 at 147.874 kb on - strand, within Atu3139 at 147.874 kb on - strand, within Atu3139 at 147.935 kb on - strand, within Atu3139 at 147.939 kb on - strand, within Atu3139 at 147.944 kb on - strand, within Atu3139 at 147.975 kb on + strand, within Atu3139 at 148.044 kb on + strand at 148.074 kb on - strand at 148.168 kb on + strand at 148.210 kb on + strand at 148.243 kb on + strand, within Atu3140 at 148.251 kb on + strand, within Atu3140 at 148.280 kb on + strand, within Atu3140 at 148.280 kb on + strand, within Atu3140 at 148.294 kb on - strand, within Atu3140 at 148.329 kb on - strand, within Atu3140 at 148.371 kb on + strand, within Atu3140 at 148.376 kb on + strand, within Atu3140 at 148.376 kb on + strand, within Atu3140 at 148.384 kb on - strand, within Atu3140 at 148.384 kb on - strand, within Atu3140 at 148.419 kb on - strand, within Atu3140 at 148.440 kb on - strand, within Atu3140 at 148.440 kb on - strand, within Atu3140 at 148.681 kb on - strand, within Atu3140 at 148.888 kb on - strand, within Atu3140 at 148.893 kb on - strand, within Atu3140 at 148.939 kb on + strand, within Atu3140 at 148.958 kb on - strand, within Atu3140 at 149.043 kb on + strand at 149.056 kb on - strand at 149.056 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 145,989 + +0.7 146,030 + +1.2 146,338 + Atu3138 0.26 -2.7 146,414 - Atu3138 0.35 -0.2 146,531 + Atu3138 0.48 -1.7 146,766 + Atu3138 0.75 -1.4 146,766 + Atu3138 0.75 +0.8 146,779 - Atu3138 0.76 -0.5 146,789 - Atu3138 0.78 +1.8 146,804 - Atu3138 0.79 +0.8 146,804 - Atu3138 0.79 -0.8 146,862 + Atu3138 0.86 -0.1 146,870 - Atu3138 0.87 -1.1 146,952 - -0.6 146,995 + -0.1 147,077 - -0.6 147,113 + Atu3139 0.12 +2.1 147,121 - Atu3139 0.12 -0.1 147,121 - Atu3139 0.12 -1.9 147,182 - Atu3139 0.18 +0.2 147,231 - Atu3139 0.22 -1.0 147,520 + Atu3139 0.47 -0.0 147,526 - Atu3139 0.48 +0.2 147,528 - Atu3139 0.48 -1.3 147,528 - Atu3139 0.48 +0.5 147,528 - Atu3139 0.48 +0.6 147,554 + Atu3139 0.50 -0.3 147,711 - Atu3139 0.64 -0.0 147,720 + Atu3139 0.65 -1.3 147,769 - Atu3139 0.69 +0.3 147,786 - Atu3139 0.71 -0.6 147,792 - Atu3139 0.71 -2.4 147,822 + Atu3139 0.74 +0.9 147,822 + Atu3139 0.74 -0.4 147,822 + Atu3139 0.74 -1.6 147,844 - Atu3139 0.76 -0.2 147,859 - Atu3139 0.77 -0.1 147,866 + Atu3139 0.78 -0.5 147,874 - Atu3139 0.78 -0.8 147,874 - Atu3139 0.78 -0.6 147,935 - Atu3139 0.84 +0.4 147,939 - Atu3139 0.84 -1.5 147,944 - Atu3139 0.85 -0.2 147,975 + Atu3139 0.87 +0.3 148,044 + -0.5 148,074 - -2.4 148,168 + +0.1 148,210 + +0.5 148,243 + Atu3140 0.11 +0.9 148,251 + Atu3140 0.12 -0.2 148,280 + Atu3140 0.15 -0.3 148,280 + Atu3140 0.15 -0.2 148,294 - Atu3140 0.16 -1.0 148,329 - Atu3140 0.20 -0.3 148,371 + Atu3140 0.25 -0.4 148,376 + Atu3140 0.25 +0.5 148,376 + Atu3140 0.25 -0.3 148,384 - Atu3140 0.26 +2.3 148,384 - Atu3140 0.26 -1.5 148,419 - Atu3140 0.30 -0.1 148,440 - Atu3140 0.32 +0.8 148,440 - Atu3140 0.32 +0.4 148,681 - Atu3140 0.59 -0.5 148,888 - Atu3140 0.82 -1.9 148,893 - Atu3140 0.82 +0.7 148,939 + Atu3140 0.87 +1.2 148,958 - Atu3140 0.89 -1.0 149,043 + -1.3 149,056 - -0.0 149,056 - +1.0
Or see this region's nucleotide sequence