Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3128 and Atu3129 are separated by 8 nucleotides Atu3129 and Atu3130 are separated by 112 nucleotides
Atu3128: Atu3128 - di-trans,poly-cis-decaprenylcistransferase, at 134,987 to 136,084
Atu3128
Atu3129: Atu3129 - polygalacturonase-like protein, at 136,093 to 137,646
Atu3129
Atu3130: Atu3130 - sugar ABC transporter substrate-binding protein, at 137,759 to 139,027
Atu3130
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 135.169 kb on - strand, within Atu3128 at 135.216 kb on + strand, within Atu3128 at 135.217 kb on - strand, within Atu3128 at 135.253 kb on + strand, within Atu3128 at 135.275 kb on - strand, within Atu3128 at 135.389 kb on + strand, within Atu3128 at 135.427 kb on + strand, within Atu3128 at 135.434 kb on + strand, within Atu3128 at 135.541 kb on + strand, within Atu3128 at 135.637 kb on + strand, within Atu3128 at 135.645 kb on - strand, within Atu3128 at 135.702 kb on + strand, within Atu3128 at 135.707 kb on + strand, within Atu3128 at 135.710 kb on - strand, within Atu3128 at 135.715 kb on - strand, within Atu3128 at 135.883 kb on + strand, within Atu3128 at 135.891 kb on - strand, within Atu3128 at 135.988 kb on - strand at 135.990 kb on - strand at 136.009 kb on + strand at 136.127 kb on + strand at 136.132 kb on - strand at 136.167 kb on + strand at 136.243 kb on - strand at 136.320 kb on - strand, within Atu3129 at 136.350 kb on + strand, within Atu3129 at 136.416 kb on - strand, within Atu3129 at 136.467 kb on + strand, within Atu3129 at 136.671 kb on + strand, within Atu3129 at 136.679 kb on - strand, within Atu3129 at 136.755 kb on - strand, within Atu3129 at 136.825 kb on - strand, within Atu3129 at 136.869 kb on - strand, within Atu3129 at 136.970 kb on - strand, within Atu3129 at 137.045 kb on - strand, within Atu3129 at 137.196 kb on + strand, within Atu3129 at 137.215 kb on - strand, within Atu3129 at 137.239 kb on - strand, within Atu3129 at 137.400 kb on + strand, within Atu3129 at 137.408 kb on - strand, within Atu3129 at 137.434 kb on + strand, within Atu3129 at 137.442 kb on - strand, within Atu3129 at 137.601 kb on + strand at 137.601 kb on + strand at 137.642 kb on + strand at 137.702 kb on - strand at 137.830 kb on + strand at 137.969 kb on - strand, within Atu3130 at 137.985 kb on + strand, within Atu3130 at 138.081 kb on - strand, within Atu3130 at 138.253 kb on + strand, within Atu3130 at 138.261 kb on - strand, within Atu3130 at 138.338 kb on - strand, within Atu3130 at 138.368 kb on - strand, within Atu3130 at 138.488 kb on + strand, within Atu3130 at 138.493 kb on - strand, within Atu3130 at 138.642 kb on + strand, within Atu3130
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 135,169 - Atu3128 0.17 -0.0 135,216 + Atu3128 0.21 -0.2 135,217 - Atu3128 0.21 -0.8 135,253 + Atu3128 0.24 -0.2 135,275 - Atu3128 0.26 -0.3 135,389 + Atu3128 0.37 +0.8 135,427 + Atu3128 0.40 -0.8 135,434 + Atu3128 0.41 +0.5 135,541 + Atu3128 0.50 -0.2 135,637 + Atu3128 0.59 -0.3 135,645 - Atu3128 0.60 -0.6 135,702 + Atu3128 0.65 +1.3 135,707 + Atu3128 0.66 -0.1 135,710 - Atu3128 0.66 -1.9 135,715 - Atu3128 0.66 -0.0 135,883 + Atu3128 0.82 +0.6 135,891 - Atu3128 0.82 +1.6 135,988 - +1.3 135,990 - -1.4 136,009 + -0.5 136,127 + -1.5 136,132 - -0.2 136,167 + -1.0 136,243 - -0.3 136,320 - Atu3129 0.15 -0.6 136,350 + Atu3129 0.17 -0.5 136,416 - Atu3129 0.21 -0.1 136,467 + Atu3129 0.24 -1.1 136,671 + Atu3129 0.37 +0.1 136,679 - Atu3129 0.38 -0.8 136,755 - Atu3129 0.43 +0.2 136,825 - Atu3129 0.47 -0.1 136,869 - Atu3129 0.50 -1.8 136,970 - Atu3129 0.56 +0.4 137,045 - Atu3129 0.61 -0.2 137,196 + Atu3129 0.71 -1.8 137,215 - Atu3129 0.72 -0.5 137,239 - Atu3129 0.74 +1.0 137,400 + Atu3129 0.84 +0.3 137,408 - Atu3129 0.85 +0.8 137,434 + Atu3129 0.86 -1.2 137,442 - Atu3129 0.87 +0.6 137,601 + +1.4 137,601 + +1.8 137,642 + -0.3 137,702 - +1.4 137,830 + +1.9 137,969 - Atu3130 0.17 +1.6 137,985 + Atu3130 0.18 +1.6 138,081 - Atu3130 0.25 -0.2 138,253 + Atu3130 0.39 +0.8 138,261 - Atu3130 0.40 -1.2 138,338 - Atu3130 0.46 -1.0 138,368 - Atu3130 0.48 -0.8 138,488 + Atu3130 0.57 -1.0 138,493 - Atu3130 0.58 -1.4 138,642 + Atu3130 0.70 +0.2
Or see this region's nucleotide sequence