Strain Fitness in Agrobacterium fabrum C58 around Atu3118

Experiment: Chloramphenicol 12.5 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3117 and Atu3118 are separated by 24 nucleotidesAtu3118 and Atu3119 are separated by 18 nucleotides Atu3117: Atu3117 - hypothetical protein, at 127,163 to 128,326 Atu3117 Atu3118: Atu3118 - hypothetical protein, at 128,351 to 129,172 Atu3118 Atu3119: Atu3119 - hypothetical protein, at 129,191 to 130,426 Atu3119 Position (kb) 128 129 130Strain fitness (log2 ratio) -2 -1 0 1 2at 127.392 kb on + strand, within Atu3117at 127.394 kb on - strand, within Atu3117at 127.408 kb on + strand, within Atu3117at 127.430 kb on + strand, within Atu3117at 127.430 kb on + strand, within Atu3117at 127.430 kb on + strand, within Atu3117at 127.559 kb on - strand, within Atu3117at 127.687 kb on - strand, within Atu3117at 127.691 kb on + strand, within Atu3117at 127.753 kb on + strand, within Atu3117at 127.867 kb on + strand, within Atu3117at 127.905 kb on - strand, within Atu3117at 127.931 kb on - strand, within Atu3117at 127.946 kb on - strand, within Atu3117at 127.974 kb on - strand, within Atu3117at 128.016 kb on + strand, within Atu3117at 128.213 kb on + strandat 128.226 kb on - strandat 128.250 kb on + strandat 128.276 kb on - strandat 128.460 kb on + strand, within Atu3118at 128.468 kb on - strand, within Atu3118at 128.478 kb on - strand, within Atu3118at 128.513 kb on - strand, within Atu3118at 128.643 kb on + strand, within Atu3118at 128.643 kb on + strand, within Atu3118at 128.649 kb on + strand, within Atu3118at 128.784 kb on - strand, within Atu3118at 128.809 kb on + strand, within Atu3118at 128.839 kb on - strand, within Atu3118at 128.906 kb on - strand, within Atu3118at 128.938 kb on - strand, within Atu3118at 128.959 kb on + strand, within Atu3118at 128.991 kb on + strand, within Atu3118at 129.031 kb on + strand, within Atu3118at 129.031 kb on + strand, within Atu3118at 129.031 kb on + strand, within Atu3118at 129.039 kb on - strand, within Atu3118at 129.067 kb on + strand, within Atu3118at 129.075 kb on - strand, within Atu3118at 129.162 kb on - strandat 129.291 kb on + strandat 129.328 kb on - strand, within Atu3119at 129.328 kb on - strand, within Atu3119at 129.352 kb on + strand, within Atu3119at 129.399 kb on - strand, within Atu3119at 129.416 kb on - strand, within Atu3119at 129.432 kb on + strand, within Atu3119at 129.440 kb on - strand, within Atu3119at 129.455 kb on + strand, within Atu3119at 129.480 kb on + strand, within Atu3119at 129.493 kb on - strand, within Atu3119at 129.558 kb on - strand, within Atu3119at 129.835 kb on + strand, within Atu3119at 129.905 kb on - strand, within Atu3119at 129.921 kb on + strand, within Atu3119at 129.954 kb on - strand, within Atu3119at 130.053 kb on - strand, within Atu3119at 130.103 kb on - strand, within Atu3119at 130.112 kb on - strand, within Atu3119at 130.159 kb on + strand, within Atu3119

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL
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127,392 + Atu3117 0.20 -1.8
127,394 - Atu3117 0.20 -0.8
127,408 + Atu3117 0.21 -0.5
127,430 + Atu3117 0.23 -0.4
127,430 + Atu3117 0.23 -1.6
127,430 + Atu3117 0.23 -0.6
127,559 - Atu3117 0.34 -2.0
127,687 - Atu3117 0.45 -0.5
127,691 + Atu3117 0.45 +1.2
127,753 + Atu3117 0.51 -0.2
127,867 + Atu3117 0.60 -1.5
127,905 - Atu3117 0.64 +0.5
127,931 - Atu3117 0.66 -1.6
127,946 - Atu3117 0.67 -0.5
127,974 - Atu3117 0.70 -1.7
128,016 + Atu3117 0.73 +1.8
128,213 + -1.0
128,226 - +0.3
128,250 + +1.8
128,276 - -1.5
128,460 + Atu3118 0.13 +0.7
128,468 - Atu3118 0.14 +0.2
128,478 - Atu3118 0.15 +1.4
128,513 - Atu3118 0.20 +0.2
128,643 + Atu3118 0.36 -0.8
128,643 + Atu3118 0.36 -0.2
128,649 + Atu3118 0.36 +1.7
128,784 - Atu3118 0.53 +0.8
128,809 + Atu3118 0.56 +1.9
128,839 - Atu3118 0.59 +0.6
128,906 - Atu3118 0.68 +1.8
128,938 - Atu3118 0.71 -0.9
128,959 + Atu3118 0.74 +0.8
128,991 + Atu3118 0.78 -0.1
129,031 + Atu3118 0.83 -1.3
129,031 + Atu3118 0.83 +0.3
129,031 + Atu3118 0.83 -1.0
129,039 - Atu3118 0.84 +0.6
129,067 + Atu3118 0.87 +1.2
129,075 - Atu3118 0.88 +2.0
129,162 - -0.2
129,291 + +1.8
129,328 - Atu3119 0.11 -1.2
129,328 - Atu3119 0.11 -0.8
129,352 + Atu3119 0.13 -0.5
129,399 - Atu3119 0.17 -1.3
129,416 - Atu3119 0.18 -0.2
129,432 + Atu3119 0.19 -1.3
129,440 - Atu3119 0.20 +0.7
129,455 + Atu3119 0.21 -0.9
129,480 + Atu3119 0.23 -0.3
129,493 - Atu3119 0.24 -0.0
129,558 - Atu3119 0.30 -0.2
129,835 + Atu3119 0.52 -1.0
129,905 - Atu3119 0.58 -1.6
129,921 + Atu3119 0.59 +0.3
129,954 - Atu3119 0.62 -0.2
130,053 - Atu3119 0.70 +0.6
130,103 - Atu3119 0.74 -1.6
130,112 - Atu3119 0.75 -0.2
130,159 + Atu3119 0.78 -0.2

Or see this region's nucleotide sequence