Strain Fitness in Agrobacterium fabrum C58 around Atu3037
Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 12.5 ug/mL |
---|---|---|---|---|---|
remove | |||||
30,091 | + | -0.8 | |||
30,358 | + | Atu3036 | 0.31 | -0.6 | |
30,358 | + | Atu3036 | 0.31 | -0.3 | |
30,358 | + | Atu3036 | 0.31 | -1.8 | |
30,596 | - | Atu3036 | 0.54 | +0.7 | |
30,758 | - | Atu3036 | 0.70 | +0.8 | |
30,938 | - | Atu3036 | 0.87 | -0.3 | |
30,946 | + | Atu3036 | 0.88 | +0.2 | |
31,006 | + | +0.2 | |||
31,099 | - | +0.6 | |||
31,104 | - | -0.0 | |||
31,131 | - | +1.1 | |||
31,231 | - | Atu3037 | 0.19 | -1.0 | |
31,342 | - | Atu3037 | 0.31 | -0.2 | |
31,379 | + | Atu3037 | 0.35 | +0.4 | |
31,402 | + | Atu3037 | 0.38 | -0.4 | |
31,405 | - | Atu3037 | 0.38 | +0.2 | |
31,587 | + | Atu3037 | 0.59 | +0.3 | |
31,669 | + | Atu3037 | 0.68 | +1.1 | |
31,718 | - | Atu3037 | 0.74 | -0.2 | |
31,718 | - | Atu3037 | 0.74 | +1.5 | |
31,718 | - | Atu3037 | 0.74 | +3.2 | |
31,764 | - | Atu3037 | 0.79 | -0.5 | |
31,793 | + | Atu3037 | 0.82 | +0.8 | |
31,800 | - | Atu3037 | 0.83 | -0.2 | |
31,801 | - | Atu3037 | 0.83 | -0.1 | |
31,857 | + | Atu3037 | 0.90 | +0.5 | |
31,862 | + | -0.8 | |||
31,865 | - | -0.5 | |||
31,870 | - | +0.2 | |||
31,873 | + | +1.8 | |||
31,873 | + | +1.3 | |||
31,895 | + | +1.8 | |||
31,956 | - | +2.3 | |||
31,961 | - | +0.9 | |||
32,008 | - | -0.7 | |||
32,021 | + | +1.3 | |||
32,029 | - | +1.0 | |||
32,088 | - | -0.2 | |||
32,156 | - | Atu3038 | 0.12 | -1.3 | |
32,172 | + | Atu3038 | 0.13 | +1.3 | |
32,244 | - | Atu3038 | 0.18 | -0.5 | |
32,338 | + | Atu3038 | 0.23 | -1.3 | |
32,372 | + | Atu3038 | 0.26 | -1.0 | |
32,380 | - | Atu3038 | 0.26 | -1.8 | |
32,390 | - | Atu3038 | 0.27 | -2.6 | |
32,415 | - | Atu3038 | 0.28 | +0.2 | |
32,459 | - | Atu3038 | 0.31 | -1.2 | |
32,601 | - | Atu3038 | 0.39 | -0.8 | |
32,612 | + | Atu3038 | 0.40 | +0.8 | |
32,661 | - | Atu3038 | 0.43 | +2.2 | |
32,676 | - | Atu3038 | 0.44 | +0.5 | |
32,686 | - | Atu3038 | 0.45 | +1.8 | |
32,688 | + | Atu3038 | 0.45 | +0.5 | |
32,731 | + | Atu3038 | 0.47 | -0.7 |
Or see this region's nucleotide sequence