Strain Fitness in Agrobacterium fabrum C58 around Atu2550

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
2,520,038	-		Atu2548	0.87	-0.6
2,520,044	+		Atu2548	0.88	-0.6
2,520,044	+		Atu2548	0.88	+1.3
2,520,044	+		Atu2548	0.88	-0.6
2,520,052	-		Atu2548	0.88	+1.6
2,520,052	-		Atu2548	0.88	+2.2
2,520,098	-				+3.7
2,520,133	+				+1.8
2,520,133	+				+0.8
2,520,155	+				-0.8
2,520,155	+				+0.2
2,520,155	+				-2.6
2,520,163	-				-0.1
2,520,344	-		Atu2549	0.27	+1.9
2,520,347	-		Atu2549	0.28	-0.1
2,520,349	-		Atu2549	0.28	+1.4
2,520,434	+		Atu2549	0.41	+3.7
2,520,457	+		Atu2549	0.44	-0.9
2,520,475	+		Atu2549	0.47	+0.6
2,520,504	+		Atu2549	0.51	+1.8
2,520,512	-		Atu2549	0.53	+2.2
2,520,554	-		Atu2549	0.59	+2.0
2,520,560	-		Atu2549	0.60	+2.4
2,520,562	+		Atu2549	0.60	+2.5
2,520,593	+		Atu2549	0.65	+1.5
2,520,635	+		Atu2549	0.71	+2.2
2,520,640	+		Atu2549	0.72	+1.2
2,520,651	+		Atu2549	0.74	+3.0
2,520,707	+		Atu2549	0.82	+1.9
2,520,710	-		Atu2549	0.83	+1.7
2,520,711	+		Atu2549	0.83	+3.4
2,520,806	-				-0.3
2,520,866	+				-1.1
2,520,866	+				-2.1
2,520,874	-				+1.1
2,520,874	-				+1.4
2,520,881	-				-0.9
2,520,897	+				-0.1
2,520,926	+				-2.4
2,520,942	-				-3.5
2,521,188	-		Atu2550	0.14	-1.9
2,521,188	-		Atu2550	0.14	-1.5
2,521,334	-		Atu2550	0.26	-1.9
2,521,334	-		Atu2550	0.26	+0.8
2,521,360	+		Atu2550	0.28	-0.5
2,521,406	-		Atu2550	0.32	-1.9
2,521,406	-		Atu2550	0.32	-2.6
2,521,423	-		Atu2550	0.33	-0.1
2,521,496	-		Atu2550	0.39	+0.5
2,521,498	+		Atu2550	0.39	-1.3
2,521,503	+		Atu2550	0.40	-1.6
2,521,503	+		Atu2550	0.40	-2.5
2,521,503	+		Atu2550	0.40	+0.2
2,521,506	-		Atu2550	0.40	-2.1
2,521,511	-		Atu2550	0.40	-1.2
2,521,535	+		Atu2550	0.42	-1.7
2,521,569	-		Atu2550	0.45	-2.7
2,521,621	-		Atu2550	0.50	-2.0
2,521,638	-		Atu2550	0.51	-3.4
2,521,639	+		Atu2550	0.51	-1.6
2,521,664	+		Atu2550	0.53	-1.3
2,521,672	-		Atu2550	0.54	-1.5
2,521,726	-		Atu2550	0.58	-1.7
2,521,726	-		Atu2550	0.58	-1.9
2,521,726	-		Atu2550	0.58	-1.4
2,521,848	-		Atu2550	0.68	-2.7
2,521,853	+		Atu2550	0.69	-1.5
2,521,879	+		Atu2550	0.71	-1.7
2,521,929	+		Atu2550	0.75	-1.1
2,521,938	-		Atu2550	0.76	-2.5
2,522,087	-		Atu2550	0.88	-3.0
2,522,087	-		Atu2550	0.88	-4.4
2,522,172	+				-1.2
2,522,247	+				-1.2
2,522,249	-				-2.0
2,522,267	+				-2.1
2,522,325	-				-0.9
2,522,383	+				-1.3
2,522,383	+				-1.0
2,522,429	-				-1.5
2,522,429	-				-2.2
2,522,491	+				-1.3
2,522,600	+		Atu2551	0.10	-1.2
2,522,653	-		Atu2551	0.12	-0.5
2,522,676	-		Atu2551	0.13	-2.3
2,522,771	+		Atu2551	0.16	-3.3
2,522,787	+		Atu2551	0.16	-2.7
2,522,787	+		Atu2551	0.16	-0.5
2,522,836	+		Atu2551	0.18	-2.3
2,522,836	+		Atu2551	0.18	+1.0
2,522,836	+		Atu2551	0.18	-1.3
2,522,878	-		Atu2551	0.19	-1.4
2,522,895	+		Atu2551	0.20	+0.5
2,522,943	-		Atu2551	0.21	-2.1
2,522,990	-		Atu2551	0.23	-2.7
2,523,041	+		Atu2551	0.25	-2.5
2,523,209	-		Atu2551	0.30	-1.4
2,523,209	-		Atu2551	0.30	-1.3