Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1675 and Atu1676 are separated by 4 nucleotides Atu1676 and Atu1677 are separated by 160 nucleotides
Atu1675: Atu1675 - transcriptional regulator, at 1,662,248 to 1,663,345
Atu1675
Atu1676: Atu1676 - para-aminobenzoate synthase component I, at 1,663,350 to 1,664,384
Atu1676
Atu1677: Atu1677 - queuine tRNA-ribosyltransferase, at 1,664,545 to 1,665,675
Atu1677
Position (kb)
1663
1664
1665 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1662.382 kb on + strand, within Atu1675 at 1662.398 kb on + strand, within Atu1675 at 1662.460 kb on + strand, within Atu1675 at 1662.466 kb on + strand, within Atu1675 at 1662.468 kb on - strand, within Atu1675 at 1662.468 kb on - strand, within Atu1675 at 1662.468 kb on - strand, within Atu1675 at 1662.486 kb on - strand, within Atu1675 at 1662.516 kb on - strand, within Atu1675 at 1662.529 kb on - strand, within Atu1675 at 1662.529 kb on - strand, within Atu1675 at 1662.583 kb on - strand, within Atu1675 at 1662.626 kb on + strand, within Atu1675 at 1662.656 kb on - strand, within Atu1675 at 1662.701 kb on + strand, within Atu1675 at 1662.701 kb on + strand, within Atu1675 at 1662.701 kb on + strand, within Atu1675 at 1662.829 kb on + strand, within Atu1675 at 1662.846 kb on - strand, within Atu1675 at 1662.958 kb on - strand, within Atu1675 at 1663.030 kb on - strand, within Atu1675 at 1663.086 kb on + strand, within Atu1675 at 1663.086 kb on + strand, within Atu1675 at 1663.109 kb on - strand, within Atu1675 at 1663.156 kb on + strand, within Atu1675 at 1663.164 kb on - strand, within Atu1675 at 1663.207 kb on + strand, within Atu1675 at 1663.215 kb on - strand, within Atu1675 at 1663.254 kb on - strand at 1663.273 kb on + strand at 1663.479 kb on - strand, within Atu1676 at 1663.527 kb on - strand, within Atu1676 at 1663.748 kb on + strand, within Atu1676 at 1663.748 kb on + strand, within Atu1676 at 1663.770 kb on + strand, within Atu1676 at 1664.206 kb on + strand, within Atu1676 at 1664.214 kb on - strand, within Atu1676 at 1664.306 kb on - strand at 1664.453 kb on - strand at 1664.459 kb on - strand at 1664.548 kb on + strand at 1664.553 kb on + strand at 1664.553 kb on + strand at 1664.558 kb on + strand at 1664.561 kb on - strand at 1664.636 kb on + strand at 1664.677 kb on + strand, within Atu1677 at 1664.981 kb on - strand, within Atu1677 at 1665.043 kb on - strand, within Atu1677 at 1665.170 kb on - strand, within Atu1677 at 1665.259 kb on + strand, within Atu1677
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 1,662,382 + Atu1675 0.12 +0.1 1,662,398 + Atu1675 0.14 +0.3 1,662,460 + Atu1675 0.19 -0.1 1,662,466 + Atu1675 0.20 -0.6 1,662,468 - Atu1675 0.20 -1.2 1,662,468 - Atu1675 0.20 -2.2 1,662,468 - Atu1675 0.20 -0.5 1,662,486 - Atu1675 0.22 -2.2 1,662,516 - Atu1675 0.24 +0.4 1,662,529 - Atu1675 0.26 +0.6 1,662,529 - Atu1675 0.26 -0.7 1,662,583 - Atu1675 0.31 +0.0 1,662,626 + Atu1675 0.34 -0.4 1,662,656 - Atu1675 0.37 +1.9 1,662,701 + Atu1675 0.41 +0.7 1,662,701 + Atu1675 0.41 -0.1 1,662,701 + Atu1675 0.41 -0.1 1,662,829 + Atu1675 0.53 +1.0 1,662,846 - Atu1675 0.54 +0.7 1,662,958 - Atu1675 0.65 -1.8 1,663,030 - Atu1675 0.71 -0.8 1,663,086 + Atu1675 0.76 -0.4 1,663,086 + Atu1675 0.76 +0.1 1,663,109 - Atu1675 0.78 +0.7 1,663,156 + Atu1675 0.83 -0.6 1,663,164 - Atu1675 0.83 +0.5 1,663,207 + Atu1675 0.87 -0.0 1,663,215 - Atu1675 0.88 -2.0 1,663,254 - -3.0 1,663,273 + +2.2 1,663,479 - Atu1676 0.12 -0.2 1,663,527 - Atu1676 0.17 +0.0 1,663,748 + Atu1676 0.38 -0.6 1,663,748 + Atu1676 0.38 -3.1 1,663,770 + Atu1676 0.41 -0.7 1,664,206 + Atu1676 0.83 -0.5 1,664,214 - Atu1676 0.83 -0.6 1,664,306 - +0.6 1,664,453 - +1.8 1,664,459 - -0.3 1,664,548 + -2.0 1,664,553 + -1.8 1,664,553 + -0.4 1,664,558 + +1.6 1,664,561 - -0.6 1,664,636 + -1.0 1,664,677 + Atu1677 0.12 -0.7 1,664,981 - Atu1677 0.39 +0.6 1,665,043 - Atu1677 0.44 -2.5 1,665,170 - Atu1677 0.55 -0.7 1,665,259 + Atu1677 0.63 -1.1
Or see this region's nucleotide sequence