Strain Fitness in Agrobacterium fabrum C58 around Atu1540

Experiment: Chloramphenicol 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 12.5 ug/mL
1,529,513	+		Atu1539	0.40	-1.3
1,529,647	+		Atu1539	0.48	-0.8
1,529,650	-		Atu1539	0.49	+0.9
1,529,693	-		Atu1539	0.51	-0.8
1,529,712	+		Atu1539	0.52	-2.0
1,529,894	+		Atu1539	0.64	+0.9
1,529,902	-		Atu1539	0.64	+1.0
1,530,227	+		Atu1539	0.84	+2.0
1,530,267	-		Atu1539	0.87	-0.9
1,530,279	-		Atu1539	0.88	+0.5
1,530,281	+		Atu1539	0.88	+0.1
1,530,286	+		Atu1539	0.88	-0.5
1,530,305	+		Atu1539	0.89	+0.1
1,530,365	-				-0.2
1,530,500	-				-2.9
1,530,548	+		Atu1540	0.12	+0.5
1,530,578	-		Atu1540	0.17	-0.2
1,530,581	-		Atu1540	0.17	-0.8
1,530,655	+		Atu1540	0.29	+0.1
1,530,655	+		Atu1540	0.29	-0.3
1,530,655	+		Atu1540	0.29	-1.7
1,530,660	+		Atu1540	0.30	-1.1
1,530,663	-		Atu1540	0.30	-2.7
1,530,698	+		Atu1540	0.36	-0.3
1,530,698	-		Atu1540	0.36	-1.9
1,530,700	+		Atu1540	0.36	+0.1
1,530,707	-		Atu1540	0.37	+0.9
1,530,787	-		Atu1540	0.50	+1.1
1,530,787	-		Atu1540	0.50	+0.1
1,530,807	-		Atu1540	0.54	+0.2
1,530,865	+		Atu1540	0.63	-0.0
1,530,899	+		Atu1540	0.68	-1.5
1,530,907	-		Atu1540	0.70	+0.9
1,531,005	+		Atu1540	0.86	+0.1
1,531,034	+				+1.4
1,531,072	-				+0.8
1,531,074	+				-0.4
1,531,082	-				-0.3
1,531,116	-				-0.2
1,531,250	-				+0.7
1,531,255	+				-0.6
1,531,263	-				-1.8
1,531,324	-		Atu1541	0.11	-0.1
1,531,608	-		Atu1541	0.25	-0.2
1,531,628	+		Atu1541	0.26	-1.7
1,531,680	+		Atu1541	0.28	+1.7
1,531,685	+		Atu1541	0.29	-2.0
1,531,776	+		Atu1541	0.33	+2.1
1,531,839	+		Atu1541	0.36	-2.3
1,531,847	-		Atu1541	0.36	+0.7
1,531,847	-		Atu1541	0.36	+0.5
1,531,924	+		Atu1541	0.40	+0.2
1,531,926	+		Atu1541	0.40	-1.4
1,532,020	-		Atu1541	0.45	-0.5
1,532,020	-		Atu1541	0.45	+0.0
1,532,020	-		Atu1541	0.45	+0.6