Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0958 and Atu0959 are separated by 176 nucleotides Atu0959 and Atu0960 are separated by 7 nucleotides Atu0960 and Atu0961 are separated by 258 nucleotides
Atu0958: Atu0958 - hypothetical protein, at 947,277 to 948,131
Atu0958
Atu0959: Atu0959 - hypothetical protein, at 948,308 to 948,703
Atu0959
Atu0960: Atu0960 - MFS permease, at 948,711 to 949,817
Atu0960
Atu0961: Atu0961 - hypothetical protein, at 950,076 to 950,690
Atu0961
Position (kb) 948
949
950 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 947.724 kb on - strand, within Atu0958 at 947.761 kb on - strand, within Atu0958 at 947.826 kb on - strand, within Atu0958 at 947.831 kb on - strand, within Atu0958 at 947.831 kb on - strand, within Atu0958 at 947.865 kb on + strand, within Atu0958 at 947.865 kb on + strand, within Atu0958 at 947.870 kb on + strand, within Atu0958 at 947.873 kb on - strand, within Atu0958 at 947.959 kb on - strand, within Atu0958 at 947.967 kb on - strand, within Atu0958 at 948.022 kb on + strand, within Atu0958 at 948.030 kb on - strand, within Atu0958 at 948.030 kb on - strand, within Atu0958 at 948.056 kb on + strand at 948.064 kb on - strand at 948.066 kb on + strand at 948.074 kb on - strand at 948.089 kb on - strand at 948.124 kb on + strand at 948.137 kb on + strand at 948.139 kb on + strand at 948.230 kb on - strand at 948.317 kb on + strand at 948.317 kb on + strand at 948.317 kb on + strand at 948.325 kb on - strand at 948.370 kb on + strand, within Atu0959 at 948.417 kb on + strand, within Atu0959 at 948.417 kb on + strand, within Atu0959 at 948.419 kb on + strand, within Atu0959 at 948.425 kb on - strand, within Atu0959 at 948.586 kb on + strand, within Atu0959 at 948.711 kb on - strand at 948.773 kb on + strand at 948.821 kb on - strand at 948.883 kb on + strand, within Atu0960 at 948.891 kb on + strand, within Atu0960 at 948.894 kb on + strand, within Atu0960 at 949.161 kb on - strand, within Atu0960 at 949.182 kb on - strand, within Atu0960 at 949.219 kb on + strand, within Atu0960 at 949.311 kb on + strand, within Atu0960 at 949.320 kb on + strand, within Atu0960 at 949.320 kb on + strand, within Atu0960 at 949.402 kb on - strand, within Atu0960 at 949.580 kb on - strand, within Atu0960 at 949.580 kb on - strand, within Atu0960 at 949.587 kb on + strand, within Atu0960 at 949.595 kb on - strand, within Atu0960 at 949.600 kb on - strand, within Atu0960 at 949.602 kb on - strand, within Atu0960 at 949.629 kb on + strand, within Atu0960 at 949.678 kb on + strand, within Atu0960 at 949.707 kb on - strand at 949.711 kb on + strand at 949.719 kb on - strand at 949.736 kb on - strand at 949.784 kb on - strand at 949.784 kb on - strand at 949.866 kb on + strand at 949.874 kb on - strand at 949.905 kb on - strand at 950.161 kb on + strand, within Atu0961 at 950.291 kb on + strand, within Atu0961 at 950.301 kb on + strand, within Atu0961 at 950.405 kb on - strand, within Atu0961 at 950.429 kb on + strand, within Atu0961 at 950.462 kb on + strand, within Atu0961 at 950.613 kb on + strand, within Atu0961 at 950.621 kb on - strand, within Atu0961 at 950.740 kb on - strand at 950.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 947,724 - Atu0958 0.52 -0.1 947,761 - Atu0958 0.57 +0.1 947,826 - Atu0958 0.64 -0.3 947,831 - Atu0958 0.65 +1.2 947,831 - Atu0958 0.65 +0.7 947,865 + Atu0958 0.69 +0.8 947,865 + Atu0958 0.69 -0.1 947,870 + Atu0958 0.69 +0.7 947,873 - Atu0958 0.70 +0.7 947,959 - Atu0958 0.80 -0.3 947,967 - Atu0958 0.81 -0.6 948,022 + Atu0958 0.87 +0.6 948,030 - Atu0958 0.88 +0.3 948,030 - Atu0958 0.88 +0.1 948,056 + -0.8 948,064 - -0.3 948,066 + -0.0 948,074 - -0.7 948,089 - -2.1 948,124 + +0.5 948,137 + +0.7 948,139 + -0.6 948,230 - -0.4 948,317 + +0.1 948,317 + +0.2 948,317 + +2.4 948,325 - -0.1 948,370 + Atu0959 0.16 -0.5 948,417 + Atu0959 0.28 +0.6 948,417 + Atu0959 0.28 +0.4 948,419 + Atu0959 0.28 -0.1 948,425 - Atu0959 0.30 -0.7 948,586 + Atu0959 0.70 +0.5 948,711 - -1.6 948,773 + +1.1 948,821 - +1.2 948,883 + Atu0960 0.16 -0.1 948,891 + Atu0960 0.16 -0.9 948,894 + Atu0960 0.17 +0.7 949,161 - Atu0960 0.41 -1.7 949,182 - Atu0960 0.43 +1.0 949,219 + Atu0960 0.46 +1.6 949,311 + Atu0960 0.54 -0.5 949,320 + Atu0960 0.55 +1.6 949,320 + Atu0960 0.55 +0.3 949,402 - Atu0960 0.62 -0.6 949,580 - Atu0960 0.79 -1.3 949,580 - Atu0960 0.79 +0.6 949,587 + Atu0960 0.79 +0.9 949,595 - Atu0960 0.80 -0.4 949,600 - Atu0960 0.80 -1.2 949,602 - Atu0960 0.80 -1.1 949,629 + Atu0960 0.83 -0.1 949,678 + Atu0960 0.87 -1.2 949,707 - -0.4 949,711 + +0.1 949,719 - +0.6 949,736 - -0.4 949,784 - +0.0 949,784 - +1.0 949,866 + +0.2 949,874 - +0.6 949,905 - +2.8 950,161 + Atu0961 0.14 -0.3 950,291 + Atu0961 0.35 -0.7 950,301 + Atu0961 0.37 -0.1 950,405 - Atu0961 0.53 +0.6 950,429 + Atu0961 0.57 -0.2 950,462 + Atu0961 0.63 -0.7 950,613 + Atu0961 0.87 -0.5 950,621 - Atu0961 0.89 -0.4 950,740 - -0.2 950,756 - +0.2
Or see this region's nucleotide sequence