Strain Fitness in Agrobacterium fabrum C58 around Atu0840

Experiment: Chloramphenicol 12.5 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0839 and Atu0840 are separated by 1 nucleotidesAtu0840 and Atu0841 are separated by 154 nucleotides Atu0839: Atu0839 - hypothetical protein, at 838,736 to 839,731 Atu0839 Atu0840: Atu0840 - ATP-dependent DNA ligase, at 839,733 to 841,358 Atu0840 Atu0841: Atu0841 - hypothetical protein, at 841,513 to 842,478 Atu0841 Position (kb) 839 840 841 842Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 838.827 kb on - strandat 838.843 kb on + strand, within Atu0839at 838.944 kb on + strand, within Atu0839at 838.952 kb on - strand, within Atu0839at 838.956 kb on + strand, within Atu0839at 838.956 kb on - strand, within Atu0839at 838.997 kb on + strand, within Atu0839at 839.000 kb on - strand, within Atu0839at 839.011 kb on - strand, within Atu0839at 839.090 kb on + strand, within Atu0839at 839.098 kb on + strand, within Atu0839at 839.098 kb on + strand, within Atu0839at 839.106 kb on - strand, within Atu0839at 839.106 kb on - strand, within Atu0839at 839.139 kb on + strand, within Atu0839at 839.192 kb on + strand, within Atu0839at 839.202 kb on + strand, within Atu0839at 839.212 kb on - strand, within Atu0839at 839.238 kb on + strand, within Atu0839at 839.382 kb on - strand, within Atu0839at 839.421 kb on - strand, within Atu0839at 839.421 kb on - strand, within Atu0839at 839.508 kb on + strand, within Atu0839at 839.557 kb on + strand, within Atu0839at 839.562 kb on + strand, within Atu0839at 839.672 kb on - strandat 839.728 kb on - strandat 839.740 kb on - strandat 839.740 kb on - strandat 839.761 kb on + strandat 839.814 kb on - strandat 839.884 kb on + strandat 839.892 kb on - strandat 839.928 kb on + strand, within Atu0840at 839.929 kb on - strand, within Atu0840at 839.934 kb on + strand, within Atu0840at 839.975 kb on - strand, within Atu0840at 840.034 kb on - strand, within Atu0840at 840.076 kb on + strand, within Atu0840at 840.087 kb on - strand, within Atu0840at 840.128 kb on - strand, within Atu0840at 840.258 kb on + strand, within Atu0840at 840.269 kb on + strand, within Atu0840at 840.269 kb on + strand, within Atu0840at 840.269 kb on + strand, within Atu0840at 840.269 kb on + strand, within Atu0840at 840.269 kb on + strand, within Atu0840at 840.269 kb on + strand, within Atu0840at 840.269 kb on + strand, within Atu0840at 840.269 kb on + strand, within Atu0840at 840.269 kb on + strand, within Atu0840at 840.277 kb on - strand, within Atu0840at 840.277 kb on - strand, within Atu0840at 840.404 kb on + strand, within Atu0840at 840.409 kb on - strand, within Atu0840at 840.526 kb on - strand, within Atu0840at 840.690 kb on - strand, within Atu0840at 840.725 kb on + strand, within Atu0840at 840.730 kb on + strand, within Atu0840at 840.880 kb on - strand, within Atu0840at 840.936 kb on - strand, within Atu0840at 841.002 kb on - strand, within Atu0840at 841.059 kb on - strand, within Atu0840at 841.203 kb on + strandat 841.238 kb on + strandat 841.238 kb on + strandat 841.243 kb on + strandat 841.286 kb on - strandat 841.467 kb on + strandat 841.467 kb on - strandat 841.472 kb on + strandat 841.475 kb on - strandat 841.480 kb on - strandat 841.480 kb on - strandat 841.480 kb on - strandat 841.497 kb on - strandat 841.571 kb on + strandat 841.650 kb on + strand, within Atu0841at 841.651 kb on - strand, within Atu0841at 841.672 kb on - strand, within Atu0841at 841.687 kb on + strand, within Atu0841at 841.695 kb on - strand, within Atu0841at 841.716 kb on + strand, within Atu0841at 841.716 kb on + strand, within Atu0841at 841.724 kb on - strand, within Atu0841at 841.847 kb on + strand, within Atu0841at 841.932 kb on + strand, within Atu0841at 842.167 kb on + strand, within Atu0841at 842.167 kb on + strand, within Atu0841at 842.196 kb on + strand, within Atu0841at 842.209 kb on - strand, within Atu0841at 842.237 kb on + strand, within Atu0841at 842.318 kb on + strand, within Atu0841at 842.326 kb on - strand, within Atu0841at 842.326 kb on - strand, within Atu0841at 842.326 kb on - strand, within Atu0841

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL
remove
838,827 - +0.2
838,843 + Atu0839 0.11 -0.6
838,944 + Atu0839 0.21 +0.4
838,952 - Atu0839 0.22 +0.7
838,956 + Atu0839 0.22 +0.2
838,956 - Atu0839 0.22 -0.4
838,997 + Atu0839 0.26 +0.2
839,000 - Atu0839 0.27 +0.4
839,011 - Atu0839 0.28 +0.9
839,090 + Atu0839 0.36 -0.4
839,098 + Atu0839 0.36 -0.0
839,098 + Atu0839 0.36 -2.8
839,106 - Atu0839 0.37 +1.2
839,106 - Atu0839 0.37 -1.3
839,139 + Atu0839 0.40 -0.2
839,192 + Atu0839 0.46 -0.2
839,202 + Atu0839 0.47 +0.3
839,212 - Atu0839 0.48 +0.4
839,238 + Atu0839 0.50 +0.3
839,382 - Atu0839 0.65 -0.0
839,421 - Atu0839 0.69 +0.1
839,421 - Atu0839 0.69 +2.4
839,508 + Atu0839 0.78 -0.8
839,557 + Atu0839 0.82 +1.0
839,562 + Atu0839 0.83 +1.6
839,672 - -0.0
839,728 - +1.2
839,740 - -0.1
839,740 - -2.2
839,761 + -1.0
839,814 - -0.8
839,884 + -1.3
839,892 - -0.5
839,928 + Atu0840 0.12 +0.3
839,929 - Atu0840 0.12 -1.5
839,934 + Atu0840 0.12 +0.2
839,975 - Atu0840 0.15 -0.0
840,034 - Atu0840 0.19 -0.3
840,076 + Atu0840 0.21 +0.6
840,087 - Atu0840 0.22 +0.9
840,128 - Atu0840 0.24 -2.1
840,258 + Atu0840 0.32 -1.2
840,269 + Atu0840 0.33 -1.0
840,269 + Atu0840 0.33 -0.8
840,269 + Atu0840 0.33 -0.5
840,269 + Atu0840 0.33 -0.4
840,269 + Atu0840 0.33 -1.9
840,269 + Atu0840 0.33 -0.5
840,269 + Atu0840 0.33 -0.6
840,269 + Atu0840 0.33 +1.2
840,269 + Atu0840 0.33 +1.7
840,277 - Atu0840 0.33 -3.1
840,277 - Atu0840 0.33 +0.7
840,404 + Atu0840 0.41 -0.5
840,409 - Atu0840 0.42 -0.8
840,526 - Atu0840 0.49 +0.4
840,690 - Atu0840 0.59 +0.4
840,725 + Atu0840 0.61 -1.0
840,730 + Atu0840 0.61 -1.0
840,880 - Atu0840 0.71 -1.8
840,936 - Atu0840 0.74 +0.6
841,002 - Atu0840 0.78 +0.2
841,059 - Atu0840 0.82 -0.9
841,203 + -0.0
841,238 + -1.2
841,238 + +0.6
841,243 + +4.4
841,286 - +1.6
841,467 + +1.4
841,467 - -1.4
841,472 + +0.1
841,475 - +0.4
841,480 - -0.3
841,480 - -0.4
841,480 - -0.0
841,497 - -1.7
841,571 + +0.2
841,650 + Atu0841 0.14 +0.2
841,651 - Atu0841 0.14 -0.9
841,672 - Atu0841 0.16 +0.8
841,687 + Atu0841 0.18 +0.3
841,695 - Atu0841 0.19 +0.8
841,716 + Atu0841 0.21 -0.0
841,716 + Atu0841 0.21 +0.1
841,724 - Atu0841 0.22 -1.8
841,847 + Atu0841 0.35 +0.8
841,932 + Atu0841 0.43 -1.0
842,167 + Atu0841 0.68 +1.6
842,167 + Atu0841 0.68 +1.6
842,196 + Atu0841 0.71 -0.3
842,209 - Atu0841 0.72 -3.1
842,237 + Atu0841 0.75 -0.7
842,318 + Atu0841 0.83 +4.6
842,326 - Atu0841 0.84 -1.3
842,326 - Atu0841 0.84 -0.4
842,326 - Atu0841 0.84 +0.5

Or see this region's nucleotide sequence