Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0524 and Atu0525 overlap by 1 nucleotides Atu0525 and Atu0526 are separated by 148 nucleotides
Atu0524: Atu0524 - transcriptional regulator, LuxR family, at 514,221 to 514,901
Atu0524
Atu0525: Atu0525 - transcriptional regulator, LuxR family, at 514,901 to 515,656
Atu0525
Atu0526: Atu0526 - methyl-accepting chemotaxis protein, at 515,805 to 517,652
Atu0526
Position (kb) 514
515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 513.915 kb on + strand at 514.123 kb on - strand at 514.150 kb on + strand at 514.217 kb on + strand at 514.223 kb on + strand at 514.231 kb on - strand at 514.267 kb on - strand at 514.305 kb on - strand, within Atu0524 at 514.305 kb on - strand, within Atu0524 at 514.426 kb on + strand, within Atu0524 at 514.516 kb on + strand, within Atu0524 at 514.531 kb on + strand, within Atu0524 at 514.561 kb on + strand, within Atu0524 at 514.569 kb on - strand, within Atu0524 at 514.750 kb on - strand, within Atu0524 at 514.757 kb on + strand, within Atu0524 at 514.886 kb on + strand at 514.919 kb on - strand at 514.944 kb on - strand at 515.258 kb on + strand, within Atu0525 at 515.317 kb on + strand, within Atu0525 at 515.443 kb on + strand, within Atu0525 at 515.527 kb on + strand, within Atu0525 at 515.546 kb on - strand, within Atu0525 at 515.547 kb on + strand, within Atu0525 at 515.569 kb on - strand, within Atu0525 at 515.649 kb on - strand at 515.666 kb on + strand at 515.666 kb on + strand at 515.674 kb on - strand at 515.674 kb on - strand at 515.679 kb on + strand at 515.687 kb on - strand at 515.819 kb on + strand at 515.827 kb on - strand at 515.840 kb on + strand at 515.963 kb on + strand at 515.968 kb on + strand at 515.971 kb on - strand at 516.024 kb on + strand, within Atu0526 at 516.033 kb on + strand, within Atu0526 at 516.034 kb on + strand, within Atu0526 at 516.042 kb on - strand, within Atu0526 at 516.042 kb on - strand, within Atu0526 at 516.201 kb on - strand, within Atu0526 at 516.292 kb on + strand, within Atu0526 at 516.374 kb on + strand, within Atu0526 at 516.382 kb on - strand, within Atu0526 at 516.382 kb on - strand, within Atu0526 at 516.631 kb on - strand, within Atu0526
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 513,915 + -0.8 514,123 - -0.1 514,150 + -2.9 514,217 + -0.3 514,223 + -1.7 514,231 - -0.0 514,267 - -0.8 514,305 - Atu0524 0.12 -1.2 514,305 - Atu0524 0.12 -0.7 514,426 + Atu0524 0.30 -0.1 514,516 + Atu0524 0.43 -1.9 514,531 + Atu0524 0.46 +0.4 514,561 + Atu0524 0.50 -1.3 514,569 - Atu0524 0.51 -0.1 514,750 - Atu0524 0.78 -0.6 514,757 + Atu0524 0.79 -1.5 514,886 + -2.1 514,919 - -0.3 514,944 - -1.5 515,258 + Atu0525 0.47 -0.5 515,317 + Atu0525 0.55 +0.4 515,443 + Atu0525 0.72 -3.3 515,527 + Atu0525 0.83 -2.8 515,546 - Atu0525 0.85 -2.0 515,547 + Atu0525 0.85 -2.6 515,569 - Atu0525 0.88 -1.9 515,649 - -2.2 515,666 + -1.5 515,666 + +0.8 515,674 - -0.5 515,674 - +2.2 515,679 + -0.4 515,687 - -1.8 515,819 + -0.4 515,827 - +0.9 515,840 + -0.8 515,963 + +2.0 515,968 + -0.1 515,971 - -1.4 516,024 + Atu0526 0.12 -1.0 516,033 + Atu0526 0.12 +0.2 516,034 + Atu0526 0.12 -0.8 516,042 - Atu0526 0.13 -0.6 516,042 - Atu0526 0.13 +0.8 516,201 - Atu0526 0.21 -1.6 516,292 + Atu0526 0.26 +0.2 516,374 + Atu0526 0.31 +1.5 516,382 - Atu0526 0.31 +1.6 516,382 - Atu0526 0.31 -1.8 516,631 - Atu0526 0.45 -0.6
Or see this region's nucleotide sequence