Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0443 and Atu0444 are separated by 7 nucleotides Atu0444 and Atu0445 are separated by 209 nucleotides Atu0445 and Atu0446 are separated by 487 nucleotides
Atu0443: Atu0443 - putative phage repressor, at 438,416 to 439,111
Atu0443
Atu0444: Atu0444 - hypothetical protein, at 439,119 to 439,418
Atu0444
Atu0445: Atu0445 - hypothetical protein, at 439,628 to 440,125
Atu0445
Atu0446: Atu0446 - hypothetical protein, at 440,613 to 441,758
Atu0446
Position (kb) 439
440
441 Strain fitness (log2 ratio) -2
-1
0
1 at 439.406 kb on - strand at 439.407 kb on + strand at 439.615 kb on - strand at 439.654 kb on + strand at 439.662 kb on - strand at 439.790 kb on + strand, within Atu0445 at 439.796 kb on - strand, within Atu0445 at 439.838 kb on - strand, within Atu0445 at 439.887 kb on + strand, within Atu0445 at 439.889 kb on + strand, within Atu0445 at 440.057 kb on + strand, within Atu0445 at 440.057 kb on + strand, within Atu0445 at 440.065 kb on - strand, within Atu0445 at 440.093 kb on - strand at 440.236 kb on + strand at 440.340 kb on + strand at 440.340 kb on + strand at 440.340 kb on + strand at 440.348 kb on - strand at 440.348 kb on - strand at 440.457 kb on - strand at 440.460 kb on - strand at 440.490 kb on - strand at 440.746 kb on + strand, within Atu0446 at 441.092 kb on + strand, within Atu0446
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 439,406 - +1.2 439,407 + -0.1 439,615 - +0.9 439,654 + -0.2 439,662 - -2.4 439,790 + Atu0445 0.33 -2.5 439,796 - Atu0445 0.34 -0.5 439,838 - Atu0445 0.42 -0.6 439,887 + Atu0445 0.52 -2.4 439,889 + Atu0445 0.52 -0.5 440,057 + Atu0445 0.86 +0.2 440,057 + Atu0445 0.86 -0.1 440,065 - Atu0445 0.88 -0.9 440,093 - -0.8 440,236 + +1.5 440,340 + +0.3 440,340 + +1.5 440,340 + +1.6 440,348 - +0.2 440,348 - -0.3 440,457 - -0.2 440,460 - +0.3 440,490 - -1.7 440,746 + Atu0446 0.12 -0.6 441,092 + Atu0446 0.42 -1.7
Or see this region's nucleotide sequence