Experiment: Chloramphenicol 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0215 and Atu0216 are separated by 63 nucleotides Atu0216 and Atu0217 are separated by 9 nucleotides
Atu0215: Atu0215 - hypothetical protein, at 220,014 to 220,838
Atu0215
Atu0216: Atu0216 - components of type IV pilus, at 220,902 to 221,888
Atu0216
Atu0217: Atu0217 - components of type IV pilus, at 221,898 to 222,902
Atu0217
Position (kb) 220
221
222 Strain fitness (log2 ratio) -2
-1
0
1 at 219.914 kb on + strand at 219.974 kb on - strand at 220.058 kb on - strand at 220.063 kb on + strand at 220.208 kb on - strand, within Atu0215 at 220.226 kb on + strand, within Atu0215 at 220.233 kb on + strand, within Atu0215 at 220.451 kb on + strand, within Atu0215 at 220.459 kb on - strand, within Atu0215 at 220.483 kb on + strand, within Atu0215 at 220.483 kb on + strand, within Atu0215 at 220.492 kb on + strand, within Atu0215 at 220.567 kb on - strand, within Atu0215 at 220.574 kb on + strand, within Atu0215 at 220.574 kb on + strand, within Atu0215 at 220.574 kb on + strand, within Atu0215 at 220.576 kb on + strand, within Atu0215 at 220.576 kb on + strand, within Atu0215 at 220.582 kb on - strand, within Atu0215 at 220.605 kb on + strand, within Atu0215 at 220.605 kb on + strand, within Atu0215 at 220.630 kb on + strand, within Atu0215 at 220.684 kb on + strand, within Atu0215 at 220.694 kb on - strand, within Atu0215 at 220.694 kb on - strand, within Atu0215 at 220.759 kb on - strand at 220.785 kb on + strand at 220.787 kb on + strand at 220.816 kb on - strand at 220.834 kb on + strand at 220.834 kb on + strand at 220.908 kb on - strand at 220.908 kb on - strand at 221.059 kb on + strand, within Atu0216 at 221.059 kb on + strand, within Atu0216 at 221.086 kb on + strand, within Atu0216 at 221.101 kb on + strand, within Atu0216 at 221.125 kb on - strand, within Atu0216 at 221.181 kb on + strand, within Atu0216 at 221.310 kb on - strand, within Atu0216 at 221.312 kb on + strand, within Atu0216 at 221.318 kb on + strand, within Atu0216 at 221.335 kb on - strand, within Atu0216 at 221.788 kb on + strand, within Atu0216 at 221.826 kb on + strand at 221.999 kb on + strand, within Atu0217 at 222.054 kb on - strand, within Atu0217 at 222.108 kb on - strand, within Atu0217 at 222.115 kb on - strand, within Atu0217 at 222.149 kb on + strand, within Atu0217 at 222.149 kb on + strand, within Atu0217 at 222.245 kb on - strand, within Atu0217 at 222.360 kb on + strand, within Atu0217 at 222.398 kb on + strand, within Atu0217 at 222.474 kb on - strand, within Atu0217 at 222.485 kb on - strand, within Atu0217 at 222.496 kb on + strand, within Atu0217 at 222.504 kb on - strand, within Atu0217 at 222.524 kb on + strand, within Atu0217 at 222.532 kb on - strand, within Atu0217 at 222.545 kb on + strand, within Atu0217 at 222.595 kb on + strand, within Atu0217 at 222.703 kb on + strand, within Atu0217 at 222.745 kb on + strand, within Atu0217 at 222.745 kb on + strand, within Atu0217 at 222.784 kb on + strand, within Atu0217 at 222.846 kb on - strand at 222.853 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 12.5 ug/mL remove 219,914 + -0.4 219,974 - -0.7 220,058 - -0.1 220,063 + -2.5 220,208 - Atu0215 0.24 +0.1 220,226 + Atu0215 0.26 -0.9 220,233 + Atu0215 0.27 -1.8 220,451 + Atu0215 0.53 +0.9 220,459 - Atu0215 0.54 -1.7 220,483 + Atu0215 0.57 -0.8 220,483 + Atu0215 0.57 -0.9 220,492 + Atu0215 0.58 -0.5 220,567 - Atu0215 0.67 -0.9 220,574 + Atu0215 0.68 -0.3 220,574 + Atu0215 0.68 +0.2 220,574 + Atu0215 0.68 +0.8 220,576 + Atu0215 0.68 -0.1 220,576 + Atu0215 0.68 +0.8 220,582 - Atu0215 0.69 +0.2 220,605 + Atu0215 0.72 +0.0 220,605 + Atu0215 0.72 -1.1 220,630 + Atu0215 0.75 +0.7 220,684 + Atu0215 0.81 -0.5 220,694 - Atu0215 0.82 -2.2 220,694 - Atu0215 0.82 -0.2 220,759 - -1.4 220,785 + -0.8 220,787 + +0.4 220,816 - -1.6 220,834 + +1.6 220,834 + -0.6 220,908 - +1.0 220,908 - +0.8 221,059 + Atu0216 0.16 -1.1 221,059 + Atu0216 0.16 -0.5 221,086 + Atu0216 0.19 -1.0 221,101 + Atu0216 0.20 +0.6 221,125 - Atu0216 0.23 -1.0 221,181 + Atu0216 0.28 -1.2 221,310 - Atu0216 0.41 -0.3 221,312 + Atu0216 0.42 +0.2 221,318 + Atu0216 0.42 -0.2 221,335 - Atu0216 0.44 +0.0 221,788 + Atu0216 0.90 +0.2 221,826 + -1.3 221,999 + Atu0217 0.10 -0.4 222,054 - Atu0217 0.16 +0.7 222,108 - Atu0217 0.21 +0.7 222,115 - Atu0217 0.22 +1.0 222,149 + Atu0217 0.25 +1.4 222,149 + Atu0217 0.25 -0.2 222,245 - Atu0217 0.35 +0.1 222,360 + Atu0217 0.46 -0.2 222,398 + Atu0217 0.50 -0.8 222,474 - Atu0217 0.57 -0.9 222,485 - Atu0217 0.58 +1.2 222,496 + Atu0217 0.60 -1.0 222,504 - Atu0217 0.60 -1.0 222,524 + Atu0217 0.62 +0.2 222,532 - Atu0217 0.63 -0.2 222,545 + Atu0217 0.64 -0.9 222,595 + Atu0217 0.69 -1.0 222,703 + Atu0217 0.80 -0.4 222,745 + Atu0217 0.84 -0.3 222,745 + Atu0217 0.84 -0.6 222,784 + Atu0217 0.88 -1.9 222,846 - -0.2 222,853 + +0.4
Or see this region's nucleotide sequence