Strain Fitness in Agrobacterium fabrum C58 around Atu5415

Experiment: Chloramphenicol 6.25 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5414 and Atu5415 overlap by 32 nucleotides Atu5414: Atu5414 - Xaa-Pro dipeptidase, at 409,155 to 410,579 Atu5414 Atu5415: Atu5415 - hypothetical protein, at 410,548 to 411,255 Atu5415 Position (kb) 410 411 412Strain fitness (log2 ratio) -2 -1 0 1at 409.598 kb on - strand, within Atu5414at 409.620 kb on + strand, within Atu5414at 409.638 kb on + strand, within Atu5414at 409.676 kb on - strand, within Atu5414at 409.677 kb on - strand, within Atu5414at 409.800 kb on - strand, within Atu5414at 409.806 kb on + strand, within Atu5414at 409.854 kb on + strand, within Atu5414at 409.854 kb on + strand, within Atu5414at 409.951 kb on - strand, within Atu5414at 409.989 kb on - strand, within Atu5414at 410.005 kb on + strand, within Atu5414at 410.009 kb on + strand, within Atu5414at 410.103 kb on - strand, within Atu5414at 410.174 kb on - strand, within Atu5414at 410.194 kb on + strand, within Atu5414at 410.201 kb on + strand, within Atu5414at 410.214 kb on + strand, within Atu5414at 410.217 kb on - strand, within Atu5414at 410.235 kb on + strand, within Atu5414at 410.250 kb on + strand, within Atu5414at 410.259 kb on - strand, within Atu5414at 410.300 kb on - strand, within Atu5414at 410.339 kb on + strand, within Atu5414at 410.344 kb on + strand, within Atu5414at 410.344 kb on + strand, within Atu5414at 410.352 kb on - strand, within Atu5414at 410.420 kb on + strand, within Atu5414at 410.429 kb on + strand, within Atu5414at 410.458 kb on + strandat 410.495 kb on + strandat 410.678 kb on + strand, within Atu5415at 410.686 kb on + strand, within Atu5415at 410.694 kb on - strand, within Atu5415at 410.696 kb on - strand, within Atu5415at 410.715 kb on + strand, within Atu5415at 410.715 kb on + strand, within Atu5415at 410.728 kb on - strand, within Atu5415at 410.787 kb on + strand, within Atu5415at 410.859 kb on - strand, within Atu5415at 410.889 kb on - strand, within Atu5415at 410.955 kb on + strand, within Atu5415at 410.963 kb on - strand, within Atu5415at 410.963 kb on - strand, within Atu5415at 411.035 kb on + strand, within Atu5415at 411.047 kb on + strand, within Atu5415at 411.168 kb on - strand, within Atu5415at 411.169 kb on - strand, within Atu5415at 411.191 kb on - strandat 411.205 kb on + strandat 411.250 kb on + strandat 411.250 kb on + strandat 411.350 kb on - strandat 411.352 kb on + strandat 411.375 kb on + strandat 411.448 kb on - strandat 411.484 kb on + strandat 411.498 kb on + strandat 411.520 kb on + strandat 411.521 kb on - strandat 411.525 kb on + strandat 411.525 kb on + strandat 411.573 kb on + strandat 411.581 kb on - strandat 411.581 kb on - strandat 411.590 kb on + strandat 411.605 kb on + strandat 411.691 kb on + strandat 411.720 kb on + strandat 411.720 kb on + strandat 411.746 kb on + strandat 411.876 kb on - strandat 411.884 kb on + strandat 411.894 kb on + strandat 411.906 kb on + strandat 411.946 kb on + strandat 411.954 kb on - strandat 411.954 kb on - strandat 411.984 kb on - strandat 412.009 kb on + strandat 412.046 kb on + strandat 412.054 kb on - strandat 412.105 kb on - strandat 412.224 kb on - strandat 412.226 kb on + strandat 412.236 kb on + strandat 412.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 6.25 ug/mL
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409,598 - Atu5414 0.31 +0.2
409,620 + Atu5414 0.33 -0.3
409,638 + Atu5414 0.34 -1.5
409,676 - Atu5414 0.37 +1.2
409,677 - Atu5414 0.37 +0.0
409,800 - Atu5414 0.45 -0.8
409,806 + Atu5414 0.46 +0.0
409,854 + Atu5414 0.49 +0.0
409,854 + Atu5414 0.49 -0.7
409,951 - Atu5414 0.56 -0.1
409,989 - Atu5414 0.59 -0.3
410,005 + Atu5414 0.60 +0.9
410,009 + Atu5414 0.60 +1.2
410,103 - Atu5414 0.67 +0.4
410,174 - Atu5414 0.72 -0.4
410,194 + Atu5414 0.73 -0.8
410,201 + Atu5414 0.73 -0.4
410,214 + Atu5414 0.74 +0.2
410,217 - Atu5414 0.75 +0.2
410,235 + Atu5414 0.76 +0.5
410,250 + Atu5414 0.77 -0.3
410,259 - Atu5414 0.77 -0.1
410,300 - Atu5414 0.80 +0.1
410,339 + Atu5414 0.83 +0.3
410,344 + Atu5414 0.83 +0.3
410,344 + Atu5414 0.83 -0.2
410,352 - Atu5414 0.84 +0.7
410,420 + Atu5414 0.89 -2.2
410,429 + Atu5414 0.89 -1.9
410,458 + +0.3
410,495 + +0.0
410,678 + Atu5415 0.18 -0.9
410,686 + Atu5415 0.19 -0.8
410,694 - Atu5415 0.21 -0.8
410,696 - Atu5415 0.21 -1.2
410,715 + Atu5415 0.24 -1.0
410,715 + Atu5415 0.24 -0.1
410,728 - Atu5415 0.25 -0.7
410,787 + Atu5415 0.34 -0.8
410,859 - Atu5415 0.44 +0.4
410,889 - Atu5415 0.48 -0.6
410,955 + Atu5415 0.57 -0.7
410,963 - Atu5415 0.59 -0.8
410,963 - Atu5415 0.59 -0.3
411,035 + Atu5415 0.69 -0.2
411,047 + Atu5415 0.70 -0.5
411,168 - Atu5415 0.88 +1.2
411,169 - Atu5415 0.88 -0.1
411,191 - +0.5
411,205 + -1.8
411,250 + -0.5
411,250 + -0.1
411,350 - -0.2
411,352 + +0.3
411,375 + +0.2
411,448 - -0.2
411,484 + +0.2
411,498 + -1.2
411,520 + -0.4
411,521 - -0.4
411,525 + -0.5
411,525 + +0.2
411,573 + -0.2
411,581 - -0.4
411,581 - -0.2
411,590 + -0.6
411,605 + -0.4
411,691 + -0.0
411,720 + -0.7
411,720 + +0.4
411,746 + +0.0
411,876 - -0.2
411,884 + -0.3
411,894 + +0.4
411,906 + -0.2
411,946 + -0.4
411,954 - -1.3
411,954 - +0.5
411,984 - +0.0
412,009 + -0.4
412,046 + +0.2
412,054 - -0.8
412,105 - +0.2
412,224 - -0.8
412,226 + +0.2
412,236 + -1.8
412,244 - -0.0

Or see this region's nucleotide sequence