Strain Fitness in Agrobacterium fabrum C58 around Atu5178

Experiment: Chloramphenicol 6.25 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5177 and Atu5178 are separated by 9 nucleotidesAtu5178 and Atu5179 are separated by 297 nucleotides Atu5177: Atu5177 - efflux protein, at 173,825 to 175,018 Atu5177 Atu5178: Atu5178 - ABC transporter nucleotide binding/ATPase, at 175,028 to 176,974 Atu5178 Atu5179: Atu5179 - hypothetical protein, at 177,272 to 177,562 Atu5179 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1 2at 174.115 kb on + strand, within Atu5177at 174.123 kb on - strand, within Atu5177at 174.123 kb on - strand, within Atu5177at 174.148 kb on + strand, within Atu5177at 174.154 kb on + strand, within Atu5177at 174.154 kb on + strand, within Atu5177at 174.162 kb on - strand, within Atu5177at 174.190 kb on + strand, within Atu5177at 174.205 kb on - strand, within Atu5177at 174.248 kb on - strand, within Atu5177at 174.249 kb on + strand, within Atu5177at 174.278 kb on + strand, within Atu5177at 174.288 kb on - strand, within Atu5177at 174.309 kb on - strand, within Atu5177at 174.331 kb on + strand, within Atu5177at 174.348 kb on + strand, within Atu5177at 174.362 kb on + strand, within Atu5177at 174.362 kb on + strand, within Atu5177at 174.374 kb on + strand, within Atu5177at 174.445 kb on + strand, within Atu5177at 174.451 kb on - strand, within Atu5177at 174.489 kb on + strand, within Atu5177at 174.497 kb on - strand, within Atu5177at 174.606 kb on + strand, within Atu5177at 174.625 kb on - strand, within Atu5177at 174.685 kb on + strand, within Atu5177at 174.685 kb on + strand, within Atu5177at 174.685 kb on + strand, within Atu5177at 174.685 kb on + strand, within Atu5177at 174.685 kb on + strand, within Atu5177at 174.685 kb on + strand, within Atu5177at 174.693 kb on - strand, within Atu5177at 174.695 kb on + strand, within Atu5177at 174.744 kb on - strand, within Atu5177at 174.744 kb on - strand, within Atu5177at 174.761 kb on + strand, within Atu5177at 174.769 kb on - strand, within Atu5177at 174.769 kb on - strand, within Atu5177at 174.769 kb on - strand, within Atu5177at 174.801 kb on + strand, within Atu5177at 174.801 kb on + strand, within Atu5177at 174.809 kb on - strand, within Atu5177at 174.817 kb on + strand, within Atu5177at 174.869 kb on + strand, within Atu5177at 174.869 kb on + strand, within Atu5177at 174.884 kb on + strand, within Atu5177at 174.892 kb on - strand, within Atu5177at 174.892 kb on - strand, within Atu5177at 174.938 kb on - strandat 174.949 kb on - strandat 174.983 kb on - strandat 175.026 kb on - strandat 175.064 kb on - strandat 175.144 kb on - strandat 175.188 kb on + strandat 175.243 kb on - strand, within Atu5178at 175.314 kb on + strand, within Atu5178at 175.373 kb on + strand, within Atu5178at 175.376 kb on - strand, within Atu5178at 175.401 kb on - strand, within Atu5178at 175.462 kb on + strand, within Atu5178at 175.497 kb on + strand, within Atu5178at 175.521 kb on + strand, within Atu5178at 175.569 kb on - strand, within Atu5178at 175.577 kb on + strand, within Atu5178at 175.617 kb on + strand, within Atu5178at 175.629 kb on - strand, within Atu5178at 175.720 kb on + strand, within Atu5178at 175.771 kb on - strand, within Atu5178at 175.771 kb on - strand, within Atu5178at 175.852 kb on - strand, within Atu5178at 175.933 kb on - strand, within Atu5178at 175.943 kb on - strand, within Atu5178at 175.962 kb on - strand, within Atu5178at 175.975 kb on - strand, within Atu5178at 175.990 kb on - strand, within Atu5178at 176.053 kb on + strand, within Atu5178at 176.053 kb on + strand, within Atu5178at 176.057 kb on + strand, within Atu5178at 176.067 kb on + strand, within Atu5178at 176.075 kb on - strand, within Atu5178at 176.169 kb on + strand, within Atu5178at 176.177 kb on - strand, within Atu5178at 176.182 kb on - strand, within Atu5178at 176.214 kb on - strand, within Atu5178at 176.274 kb on + strand, within Atu5178at 176.275 kb on + strand, within Atu5178at 176.282 kb on - strand, within Atu5178at 176.350 kb on - strand, within Atu5178at 176.422 kb on - strand, within Atu5178at 176.452 kb on + strand, within Atu5178at 176.555 kb on + strand, within Atu5178at 176.562 kb on + strand, within Atu5178at 176.567 kb on + strand, within Atu5178at 176.575 kb on - strand, within Atu5178at 176.594 kb on - strand, within Atu5178at 176.655 kb on - strand, within Atu5178at 176.732 kb on - strand, within Atu5178at 176.740 kb on + strand, within Atu5178at 176.754 kb on + strand, within Atu5178at 176.756 kb on + strand, within Atu5178at 176.761 kb on + strand, within Atu5178at 176.883 kb on - strandat 176.886 kb on + strandat 176.894 kb on - strandat 176.947 kb on + strandat 176.957 kb on + strandat 177.011 kb on + strandat 177.072 kb on - strandat 177.125 kb on - strandat 177.181 kb on + strandat 177.245 kb on - strandat 177.249 kb on + strandat 177.274 kb on + strandat 177.314 kb on + strand, within Atu5179at 177.317 kb on - strand, within Atu5179at 177.332 kb on - strand, within Atu5179at 177.383 kb on + strand, within Atu5179at 177.391 kb on - strand, within Atu5179at 177.402 kb on - strand, within Atu5179at 177.445 kb on + strand, within Atu5179at 177.445 kb on + strand, within Atu5179at 177.453 kb on - strand, within Atu5179at 177.549 kb on - strandat 177.584 kb on - strandat 177.670 kb on + strandat 177.673 kb on - strandat 177.793 kb on + strandat 177.798 kb on + strandat 177.806 kb on - strandat 177.857 kb on - strandat 177.904 kb on - strandat 177.932 kb on + strandat 177.948 kb on + strandat 177.956 kb on - strandat 177.956 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 6.25 ug/mL
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174,115 + Atu5177 0.24 -0.3
174,123 - Atu5177 0.25 +0.3
174,123 - Atu5177 0.25 +0.5
174,148 + Atu5177 0.27 +0.0
174,154 + Atu5177 0.28 +0.2
174,154 + Atu5177 0.28 -1.2
174,162 - Atu5177 0.28 +0.4
174,190 + Atu5177 0.31 -0.2
174,205 - Atu5177 0.32 +0.3
174,248 - Atu5177 0.35 -0.2
174,249 + Atu5177 0.36 +0.4
174,278 + Atu5177 0.38 -0.2
174,288 - Atu5177 0.39 -0.5
174,309 - Atu5177 0.41 +0.3
174,331 + Atu5177 0.42 +0.3
174,348 + Atu5177 0.44 +0.2
174,362 + Atu5177 0.45 +1.2
174,362 + Atu5177 0.45 +0.2
174,374 + Atu5177 0.46 +0.6
174,445 + Atu5177 0.52 +1.0
174,451 - Atu5177 0.52 -1.0
174,489 + Atu5177 0.56 -1.3
174,497 - Atu5177 0.56 +0.7
174,606 + Atu5177 0.65 -0.1
174,625 - Atu5177 0.67 +0.1
174,685 + Atu5177 0.72 -0.1
174,685 + Atu5177 0.72 +0.2
174,685 + Atu5177 0.72 -0.9
174,685 + Atu5177 0.72 -0.3
174,685 + Atu5177 0.72 -0.1
174,685 + Atu5177 0.72 +0.3
174,693 - Atu5177 0.73 -0.4
174,695 + Atu5177 0.73 -0.3
174,744 - Atu5177 0.77 -0.1
174,744 - Atu5177 0.77 +0.2
174,761 + Atu5177 0.78 +0.7
174,769 - Atu5177 0.79 +0.5
174,769 - Atu5177 0.79 -0.6
174,769 - Atu5177 0.79 -0.5
174,801 + Atu5177 0.82 +0.4
174,801 + Atu5177 0.82 +0.1
174,809 - Atu5177 0.82 -0.2
174,817 + Atu5177 0.83 -0.1
174,869 + Atu5177 0.87 +0.6
174,869 + Atu5177 0.87 -0.8
174,884 + Atu5177 0.89 +0.5
174,892 - Atu5177 0.89 +0.3
174,892 - Atu5177 0.89 +0.2
174,938 - +0.6
174,949 - +0.4
174,983 - -1.1
175,026 - +0.2
175,064 - -0.1
175,144 - +0.1
175,188 + -0.9
175,243 - Atu5178 0.11 -0.2
175,314 + Atu5178 0.15 +1.2
175,373 + Atu5178 0.18 +0.0
175,376 - Atu5178 0.18 +2.2
175,401 - Atu5178 0.19 -0.2
175,462 + Atu5178 0.22 +0.0
175,497 + Atu5178 0.24 -0.1
175,521 + Atu5178 0.25 -0.6
175,569 - Atu5178 0.28 -0.2
175,577 + Atu5178 0.28 +0.1
175,617 + Atu5178 0.30 -0.6
175,629 - Atu5178 0.31 -0.2
175,720 + Atu5178 0.36 -0.2
175,771 - Atu5178 0.38 -0.5
175,771 - Atu5178 0.38 -0.4
175,852 - Atu5178 0.42 -0.6
175,933 - Atu5178 0.46 -0.5
175,943 - Atu5178 0.47 -0.4
175,962 - Atu5178 0.48 -1.8
175,975 - Atu5178 0.49 -1.3
175,990 - Atu5178 0.49 +0.9
176,053 + Atu5178 0.53 +0.0
176,053 + Atu5178 0.53 -0.1
176,057 + Atu5178 0.53 -0.2
176,067 + Atu5178 0.53 +0.7
176,075 - Atu5178 0.54 +0.5
176,169 + Atu5178 0.59 -0.1
176,177 - Atu5178 0.59 +0.2
176,182 - Atu5178 0.59 +0.7
176,214 - Atu5178 0.61 -0.4
176,274 + Atu5178 0.64 -0.2
176,275 + Atu5178 0.64 -0.3
176,282 - Atu5178 0.64 -0.4
176,350 - Atu5178 0.68 +0.7
176,422 - Atu5178 0.72 +0.1
176,452 + Atu5178 0.73 +0.3
176,555 + Atu5178 0.78 +0.7
176,562 + Atu5178 0.79 -0.3
176,567 + Atu5178 0.79 +1.2
176,575 - Atu5178 0.79 -0.5
176,594 - Atu5178 0.80 +0.2
176,655 - Atu5178 0.84 +0.2
176,732 - Atu5178 0.88 -0.1
176,740 + Atu5178 0.88 +1.6
176,754 + Atu5178 0.89 +0.3
176,756 + Atu5178 0.89 -0.3
176,761 + Atu5178 0.89 +0.3
176,883 - +0.2
176,886 + -1.0
176,894 - -0.1
176,947 + -0.8
176,957 + +0.3
177,011 + +0.7
177,072 - +0.1
177,125 - -0.8
177,181 + +1.0
177,245 - +0.7
177,249 + -0.4
177,274 + +0.3
177,314 + Atu5179 0.14 +0.3
177,317 - Atu5179 0.15 -1.0
177,332 - Atu5179 0.21 -0.3
177,383 + Atu5179 0.38 -0.1
177,391 - Atu5179 0.41 +0.2
177,402 - Atu5179 0.45 -0.2
177,445 + Atu5179 0.59 -0.0
177,445 + Atu5179 0.59 -0.2
177,453 - Atu5179 0.62 -0.4
177,549 - -0.1
177,584 - +0.7
177,670 + +0.5
177,673 - -0.5
177,793 + +0.2
177,798 + -0.5
177,806 - -0.2
177,857 - +1.1
177,904 - +0.8
177,932 + +0.2
177,948 + +0.0
177,956 - +1.2
177,956 - -0.4

Or see this region's nucleotide sequence