Strain Fitness in Agrobacterium fabrum C58 around Atu5177

Experiment: Chloramphenicol 6.25 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5176 and Atu5177 are separated by 246 nucleotidesAtu5177 and Atu5178 are separated by 9 nucleotides Atu5176: Atu5176 - two component sensor kinase, at 172,229 to 173,578 Atu5176 Atu5177: Atu5177 - efflux protein, at 173,825 to 175,018 Atu5177 Atu5178: Atu5178 - ABC transporter nucleotide binding/ATPase, at 175,028 to 176,974 Atu5178 Position (kb) 173 174 175 176Strain fitness (log2 ratio) -2 -1 0 1 2at 172.835 kb on + strand, within Atu5176at 172.862 kb on + strand, within Atu5176at 172.994 kb on - strand, within Atu5176at 172.999 kb on + strand, within Atu5176at 172.999 kb on - strand, within Atu5176at 173.025 kb on + strand, within Atu5176at 173.033 kb on - strand, within Atu5176at 173.033 kb on - strand, within Atu5176at 173.033 kb on - strand, within Atu5176at 173.042 kb on - strand, within Atu5176at 173.092 kb on - strand, within Atu5176at 173.143 kb on - strand, within Atu5176at 173.294 kb on + strand, within Atu5176at 173.306 kb on + strand, within Atu5176at 173.330 kb on - strand, within Atu5176at 173.411 kb on - strand, within Atu5176at 173.419 kb on - strand, within Atu5176at 173.436 kb on + strand, within Atu5176at 173.442 kb on - strand, within Atu5176at 173.444 kb on - strandat 173.458 kb on + strandat 173.458 kb on + strandat 173.463 kb on - strandat 173.508 kb on + strandat 173.547 kb on + strandat 173.574 kb on + strandat 173.872 kb on + strandat 174.115 kb on + strand, within Atu5177at 174.123 kb on - strand, within Atu5177at 174.123 kb on - strand, within Atu5177at 174.148 kb on + strand, within Atu5177at 174.154 kb on + strand, within Atu5177at 174.154 kb on + strand, within Atu5177at 174.162 kb on - strand, within Atu5177at 174.190 kb on + strand, within Atu5177at 174.205 kb on - strand, within Atu5177at 174.248 kb on - strand, within Atu5177at 174.249 kb on + strand, within Atu5177at 174.278 kb on + strand, within Atu5177at 174.288 kb on - strand, within Atu5177at 174.309 kb on - strand, within Atu5177at 174.331 kb on + strand, within Atu5177at 174.348 kb on + strand, within Atu5177at 174.362 kb on + strand, within Atu5177at 174.362 kb on + strand, within Atu5177at 174.374 kb on + strand, within Atu5177at 174.445 kb on + strand, within Atu5177at 174.451 kb on - strand, within Atu5177at 174.489 kb on + strand, within Atu5177at 174.497 kb on - strand, within Atu5177at 174.606 kb on + strand, within Atu5177at 174.625 kb on - strand, within Atu5177at 174.685 kb on + strand, within Atu5177at 174.685 kb on + strand, within Atu5177at 174.685 kb on + strand, within Atu5177at 174.685 kb on + strand, within Atu5177at 174.685 kb on + strand, within Atu5177at 174.685 kb on + strand, within Atu5177at 174.693 kb on - strand, within Atu5177at 174.695 kb on + strand, within Atu5177at 174.744 kb on - strand, within Atu5177at 174.744 kb on - strand, within Atu5177at 174.761 kb on + strand, within Atu5177at 174.769 kb on - strand, within Atu5177at 174.769 kb on - strand, within Atu5177at 174.769 kb on - strand, within Atu5177at 174.801 kb on + strand, within Atu5177at 174.801 kb on + strand, within Atu5177at 174.809 kb on - strand, within Atu5177at 174.817 kb on + strand, within Atu5177at 174.869 kb on + strand, within Atu5177at 174.869 kb on + strand, within Atu5177at 174.884 kb on + strand, within Atu5177at 174.892 kb on - strand, within Atu5177at 174.892 kb on - strand, within Atu5177at 174.938 kb on - strandat 174.949 kb on - strandat 174.983 kb on - strandat 175.026 kb on - strandat 175.064 kb on - strandat 175.144 kb on - strandat 175.188 kb on + strandat 175.243 kb on - strand, within Atu5178at 175.314 kb on + strand, within Atu5178at 175.373 kb on + strand, within Atu5178at 175.376 kb on - strand, within Atu5178at 175.401 kb on - strand, within Atu5178at 175.462 kb on + strand, within Atu5178at 175.497 kb on + strand, within Atu5178at 175.521 kb on + strand, within Atu5178at 175.569 kb on - strand, within Atu5178at 175.577 kb on + strand, within Atu5178at 175.617 kb on + strand, within Atu5178at 175.629 kb on - strand, within Atu5178at 175.720 kb on + strand, within Atu5178at 175.771 kb on - strand, within Atu5178at 175.771 kb on - strand, within Atu5178at 175.852 kb on - strand, within Atu5178at 175.933 kb on - strand, within Atu5178at 175.943 kb on - strand, within Atu5178at 175.962 kb on - strand, within Atu5178at 175.975 kb on - strand, within Atu5178at 175.990 kb on - strand, within Atu5178

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 6.25 ug/mL
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172,835 + Atu5176 0.45 +0.3
172,862 + Atu5176 0.47 -0.5
172,994 - Atu5176 0.57 +0.6
172,999 + Atu5176 0.57 +0.9
172,999 - Atu5176 0.57 +0.3
173,025 + Atu5176 0.59 +0.6
173,033 - Atu5176 0.60 +0.0
173,033 - Atu5176 0.60 +0.6
173,033 - Atu5176 0.60 +0.2
173,042 - Atu5176 0.60 +0.4
173,092 - Atu5176 0.64 +0.3
173,143 - Atu5176 0.68 +0.3
173,294 + Atu5176 0.79 -0.4
173,306 + Atu5176 0.80 +0.4
173,330 - Atu5176 0.82 -0.6
173,411 - Atu5176 0.88 +0.4
173,419 - Atu5176 0.88 -0.2
173,436 + Atu5176 0.89 -0.5
173,442 - Atu5176 0.90 -0.2
173,444 - +0.5
173,458 + -0.1
173,458 + -0.3
173,463 - -0.5
173,508 + +0.0
173,547 + -0.6
173,574 + +1.2
173,872 + +0.2
174,115 + Atu5177 0.24 -0.3
174,123 - Atu5177 0.25 +0.3
174,123 - Atu5177 0.25 +0.5
174,148 + Atu5177 0.27 +0.0
174,154 + Atu5177 0.28 +0.2
174,154 + Atu5177 0.28 -1.2
174,162 - Atu5177 0.28 +0.4
174,190 + Atu5177 0.31 -0.2
174,205 - Atu5177 0.32 +0.3
174,248 - Atu5177 0.35 -0.2
174,249 + Atu5177 0.36 +0.4
174,278 + Atu5177 0.38 -0.2
174,288 - Atu5177 0.39 -0.5
174,309 - Atu5177 0.41 +0.3
174,331 + Atu5177 0.42 +0.3
174,348 + Atu5177 0.44 +0.2
174,362 + Atu5177 0.45 +1.2
174,362 + Atu5177 0.45 +0.2
174,374 + Atu5177 0.46 +0.6
174,445 + Atu5177 0.52 +1.0
174,451 - Atu5177 0.52 -1.0
174,489 + Atu5177 0.56 -1.3
174,497 - Atu5177 0.56 +0.7
174,606 + Atu5177 0.65 -0.1
174,625 - Atu5177 0.67 +0.1
174,685 + Atu5177 0.72 -0.1
174,685 + Atu5177 0.72 +0.2
174,685 + Atu5177 0.72 -0.9
174,685 + Atu5177 0.72 -0.3
174,685 + Atu5177 0.72 -0.1
174,685 + Atu5177 0.72 +0.3
174,693 - Atu5177 0.73 -0.4
174,695 + Atu5177 0.73 -0.3
174,744 - Atu5177 0.77 -0.1
174,744 - Atu5177 0.77 +0.2
174,761 + Atu5177 0.78 +0.7
174,769 - Atu5177 0.79 +0.5
174,769 - Atu5177 0.79 -0.6
174,769 - Atu5177 0.79 -0.5
174,801 + Atu5177 0.82 +0.4
174,801 + Atu5177 0.82 +0.1
174,809 - Atu5177 0.82 -0.2
174,817 + Atu5177 0.83 -0.1
174,869 + Atu5177 0.87 +0.6
174,869 + Atu5177 0.87 -0.8
174,884 + Atu5177 0.89 +0.5
174,892 - Atu5177 0.89 +0.3
174,892 - Atu5177 0.89 +0.2
174,938 - +0.6
174,949 - +0.4
174,983 - -1.1
175,026 - +0.2
175,064 - -0.1
175,144 - +0.1
175,188 + -0.9
175,243 - Atu5178 0.11 -0.2
175,314 + Atu5178 0.15 +1.2
175,373 + Atu5178 0.18 +0.0
175,376 - Atu5178 0.18 +2.2
175,401 - Atu5178 0.19 -0.2
175,462 + Atu5178 0.22 +0.0
175,497 + Atu5178 0.24 -0.1
175,521 + Atu5178 0.25 -0.6
175,569 - Atu5178 0.28 -0.2
175,577 + Atu5178 0.28 +0.1
175,617 + Atu5178 0.30 -0.6
175,629 - Atu5178 0.31 -0.2
175,720 + Atu5178 0.36 -0.2
175,771 - Atu5178 0.38 -0.5
175,771 - Atu5178 0.38 -0.4
175,852 - Atu5178 0.42 -0.6
175,933 - Atu5178 0.46 -0.5
175,943 - Atu5178 0.47 -0.4
175,962 - Atu5178 0.48 -1.8
175,975 - Atu5178 0.49 -1.3
175,990 - Atu5178 0.49 +0.9

Or see this region's nucleotide sequence