Strain Fitness in Agrobacterium fabrum C58 around Atu3476
Experiment: Chloramphenicol 6.25 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 6.25 ug/mL |
---|---|---|---|---|---|
remove | |||||
523,113 | - | Atu3475 | 0.39 | +0.7 | |
523,113 | - | Atu3475 | 0.39 | -0.5 | |
523,202 | + | Atu3475 | 0.47 | -0.9 | |
523,233 | + | Atu3475 | 0.49 | -0.9 | |
523,236 | - | Atu3475 | 0.49 | -0.2 | |
523,241 | - | Atu3475 | 0.50 | -0.3 | |
523,248 | + | Atu3475 | 0.50 | -0.5 | |
523,290 | - | Atu3475 | 0.54 | -0.9 | |
523,349 | + | Atu3475 | 0.59 | +0.4 | |
523,474 | + | Atu3475 | 0.69 | -0.3 | |
523,486 | - | Atu3475 | 0.70 | -0.2 | |
523,603 | + | Atu3475 | 0.79 | -1.2 | |
523,781 | - | -0.5 | |||
523,783 | + | +0.3 | |||
523,842 | + | -0.5 | |||
523,842 | + | -0.7 | |||
523,842 | + | +0.7 | |||
523,850 | - | +0.4 | |||
523,850 | - | -0.1 | |||
523,850 | - | -0.4 | |||
524,068 | + | Atu3476 | 0.20 | -1.2 | |
524,072 | - | Atu3476 | 0.21 | -2.6 | |
524,076 | - | Atu3476 | 0.22 | +0.7 | |
524,114 | - | Atu3476 | 0.30 | -0.7 | |
524,123 | + | Atu3476 | 0.32 | +0.3 | |
524,201 | + | Atu3476 | 0.49 | +1.1 | |
524,268 | - | Atu3476 | 0.63 | +0.1 | |
524,273 | - | Atu3476 | 0.64 | -0.4 | |
524,458 | + | +0.5 | |||
524,536 | - | +0.8 | |||
524,690 | - | Atu3477 | 0.14 | +0.1 | |
524,710 | - | Atu3477 | 0.16 | -1.2 | |
524,721 | + | Atu3477 | 0.17 | +0.4 | |
524,739 | + | Atu3477 | 0.18 | -0.2 | |
524,823 | + | Atu3477 | 0.25 | -0.7 | |
524,823 | + | Atu3477 | 0.25 | -0.1 | |
524,831 | - | Atu3477 | 0.26 | -0.2 | |
524,831 | - | Atu3477 | 0.26 | -0.1 | |
524,973 | + | Atu3477 | 0.38 | -0.4 | |
524,973 | + | Atu3477 | 0.38 | +0.5 | |
524,981 | - | Atu3477 | 0.39 | -0.3 | |
524,987 | - | Atu3477 | 0.39 | +0.1 | |
525,069 | - | Atu3477 | 0.46 | -0.2 | |
525,112 | + | Atu3477 | 0.50 | +1.4 | |
525,133 | + | Atu3477 | 0.52 | -1.4 | |
525,173 | + | Atu3477 | 0.55 | +0.5 | |
525,181 | - | Atu3477 | 0.56 | +0.6 | |
525,441 | + | Atu3477 | 0.78 | -0.0 |
Or see this region's nucleotide sequence