Strain Fitness in Agrobacterium fabrum C58 around Atu3274

Experiment: Chloramphenicol 6.25 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3273 and Atu3274 overlap by 4 nucleotidesAtu3274 and Atu3275 overlap by 4 nucleotidesAtu3275 and Atu3276 overlap by 1 nucleotides Atu3273: Atu3273 - HlyD family secretion protein, at 293,317 to 294,594 Atu3273 Atu3274: Atu3274 - AcrB/AcrD/AcrF family protein, at 294,591 to 297,731 Atu3274 Atu3275: Atu3275 - invasion associated protein B, at 297,728 to 298,306 Atu3275 Atu3276: Atu3276 - hypothetical protein, at 298,306 to 302,331 Atu3276 Position (kb) 294 295 296 297 298Strain fitness (log2 ratio) -2 -1 0 1 2 3at 293.608 kb on - strand, within Atu3273at 293.611 kb on - strand, within Atu3273at 293.638 kb on + strand, within Atu3273at 293.645 kb on - strand, within Atu3273at 293.736 kb on - strand, within Atu3273at 293.754 kb on + strand, within Atu3273at 293.756 kb on - strand, within Atu3273at 293.756 kb on - strand, within Atu3273at 293.762 kb on - strand, within Atu3273at 293.780 kb on + strand, within Atu3273at 293.790 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.865 kb on - strand, within Atu3273at 293.865 kb on - strand, within Atu3273at 293.870 kb on - strand, within Atu3273at 293.870 kb on - strand, within Atu3273at 293.870 kb on - strand, within Atu3273at 293.870 kb on - strand, within Atu3273at 293.870 kb on - strand, within Atu3273at 293.921 kb on + strand, within Atu3273at 293.926 kb on + strand, within Atu3273at 293.926 kb on + strand, within Atu3273at 293.936 kb on + strand, within Atu3273at 294.002 kb on + strand, within Atu3273at 294.065 kb on + strand, within Atu3273at 294.065 kb on + strand, within Atu3273at 294.153 kb on + strand, within Atu3273at 294.198 kb on + strand, within Atu3273at 294.207 kb on - strand, within Atu3273at 294.282 kb on - strand, within Atu3273at 294.377 kb on - strand, within Atu3273at 294.384 kb on - strand, within Atu3273at 294.489 kb on - strandat 294.670 kb on + strandat 294.683 kb on + strandat 294.696 kb on - strandat 294.786 kb on - strandat 294.805 kb on - strandat 294.814 kb on + strandat 294.964 kb on + strand, within Atu3274at 295.002 kb on + strand, within Atu3274at 295.053 kb on - strand, within Atu3274at 295.102 kb on + strand, within Atu3274at 295.123 kb on - strand, within Atu3274at 295.123 kb on - strand, within Atu3274at 295.130 kb on + strand, within Atu3274at 295.130 kb on + strand, within Atu3274at 295.138 kb on - strand, within Atu3274at 295.138 kb on - strand, within Atu3274at 295.138 kb on - strand, within Atu3274at 295.159 kb on - strand, within Atu3274at 295.166 kb on + strand, within Atu3274at 295.194 kb on - strand, within Atu3274at 295.244 kb on + strand, within Atu3274at 295.292 kb on + strand, within Atu3274at 295.335 kb on - strand, within Atu3274at 295.426 kb on + strand, within Atu3274at 295.601 kb on + strand, within Atu3274at 295.689 kb on + strand, within Atu3274at 295.723 kb on - strand, within Atu3274at 295.730 kb on - strand, within Atu3274at 295.857 kb on + strand, within Atu3274at 295.857 kb on + strand, within Atu3274at 295.865 kb on - strand, within Atu3274at 295.895 kb on + strand, within Atu3274at 295.898 kb on - strand, within Atu3274at 296.010 kb on + strand, within Atu3274at 296.020 kb on + strand, within Atu3274at 296.047 kb on - strand, within Atu3274at 296.052 kb on - strand, within Atu3274at 296.124 kb on - strand, within Atu3274at 296.213 kb on + strand, within Atu3274at 296.213 kb on + strand, within Atu3274at 296.412 kb on + strand, within Atu3274at 296.442 kb on - strand, within Atu3274at 296.469 kb on - strand, within Atu3274at 296.469 kb on - strand, within Atu3274at 296.638 kb on - strand, within Atu3274at 296.651 kb on - strand, within Atu3274at 296.657 kb on + strand, within Atu3274at 296.679 kb on + strand, within Atu3274at 296.714 kb on - strand, within Atu3274at 296.767 kb on - strand, within Atu3274at 296.913 kb on + strand, within Atu3274at 296.913 kb on + strand, within Atu3274at 296.948 kb on - strand, within Atu3274at 296.990 kb on - strand, within Atu3274at 297.015 kb on - strand, within Atu3274at 297.025 kb on - strand, within Atu3274at 297.052 kb on + strand, within Atu3274at 297.070 kb on - strand, within Atu3274at 297.070 kb on - strand, within Atu3274at 297.130 kb on + strand, within Atu3274at 297.340 kb on - strand, within Atu3274at 297.383 kb on - strand, within Atu3274at 297.494 kb on - strandat 297.517 kb on + strandat 297.517 kb on + strandat 297.597 kb on + strandat 297.640 kb on - strandat 297.671 kb on + strandat 297.676 kb on + strandat 297.801 kb on - strand, within Atu3275at 297.832 kb on - strand, within Atu3275at 297.880 kb on + strand, within Atu3275at 297.901 kb on + strand, within Atu3275at 297.906 kb on + strand, within Atu3275at 297.914 kb on - strand, within Atu3275at 297.919 kb on - strand, within Atu3275at 297.956 kb on - strand, within Atu3275at 298.005 kb on - strand, within Atu3275at 298.005 kb on - strand, within Atu3275at 298.082 kb on - strand, within Atu3275at 298.174 kb on - strand, within Atu3275at 298.242 kb on - strand, within Atu3275at 298.337 kb on + strandat 298.404 kb on + strandat 298.406 kb on + strandat 298.424 kb on - strandat 298.454 kb on - strandat 298.504 kb on - strandat 298.529 kb on + strandat 298.626 kb on + strandat 298.665 kb on + strandat 298.698 kb on - strandat 298.724 kb on - strand, within Atu3276

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 6.25 ug/mL
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293,608 - Atu3273 0.23 +0.1
293,611 - Atu3273 0.23 -0.3
293,638 + Atu3273 0.25 +0.3
293,645 - Atu3273 0.26 -0.4
293,736 - Atu3273 0.33 +0.0
293,754 + Atu3273 0.34 +0.5
293,756 - Atu3273 0.34 -0.3
293,756 - Atu3273 0.34 +1.1
293,762 - Atu3273 0.35 +0.4
293,780 + Atu3273 0.36 -0.7
293,790 + Atu3273 0.37 -0.2
293,862 + Atu3273 0.43 +0.6
293,862 + Atu3273 0.43 +1.7
293,862 + Atu3273 0.43 -0.7
293,862 + Atu3273 0.43 -0.2
293,862 + Atu3273 0.43 -0.5
293,862 + Atu3273 0.43 +0.2
293,862 + Atu3273 0.43 +1.8
293,862 + Atu3273 0.43 +3.1
293,862 + Atu3273 0.43 -0.6
293,865 - Atu3273 0.43 -0.1
293,865 - Atu3273 0.43 +0.5
293,870 - Atu3273 0.43 -0.2
293,870 - Atu3273 0.43 +3.1
293,870 - Atu3273 0.43 -0.4
293,870 - Atu3273 0.43 +0.4
293,870 - Atu3273 0.43 +0.3
293,921 + Atu3273 0.47 +0.3
293,926 + Atu3273 0.48 +0.5
293,926 + Atu3273 0.48 -0.0
293,936 + Atu3273 0.48 +0.3
294,002 + Atu3273 0.54 +0.1
294,065 + Atu3273 0.59 +2.1
294,065 + Atu3273 0.59 -0.1
294,153 + Atu3273 0.65 -0.4
294,198 + Atu3273 0.69 -0.1
294,207 - Atu3273 0.70 -0.1
294,282 - Atu3273 0.76 -0.1
294,377 - Atu3273 0.83 +0.9
294,384 - Atu3273 0.83 -0.2
294,489 - +0.2
294,670 + -0.4
294,683 + +0.3
294,696 - -0.5
294,786 - -0.2
294,805 - -1.7
294,814 + -0.1
294,964 + Atu3274 0.12 +1.1
295,002 + Atu3274 0.13 -0.5
295,053 - Atu3274 0.15 -0.0
295,102 + Atu3274 0.16 +0.5
295,123 - Atu3274 0.17 +0.0
295,123 - Atu3274 0.17 +0.8
295,130 + Atu3274 0.17 +1.4
295,130 + Atu3274 0.17 -0.8
295,138 - Atu3274 0.17 -2.4
295,138 - Atu3274 0.17 +1.1
295,138 - Atu3274 0.17 +0.7
295,159 - Atu3274 0.18 -0.9
295,166 + Atu3274 0.18 -1.0
295,194 - Atu3274 0.19 -0.4
295,244 + Atu3274 0.21 +0.2
295,292 + Atu3274 0.22 -0.4
295,335 - Atu3274 0.24 -1.8
295,426 + Atu3274 0.27 +0.4
295,601 + Atu3274 0.32 +0.6
295,689 + Atu3274 0.35 +0.5
295,723 - Atu3274 0.36 -0.1
295,730 - Atu3274 0.36 -1.5
295,857 + Atu3274 0.40 -0.1
295,857 + Atu3274 0.40 +0.7
295,865 - Atu3274 0.41 -0.9
295,895 + Atu3274 0.42 +0.0
295,898 - Atu3274 0.42 +2.1
296,010 + Atu3274 0.45 -0.5
296,020 + Atu3274 0.45 +0.8
296,047 - Atu3274 0.46 +0.2
296,052 - Atu3274 0.47 -0.2
296,124 - Atu3274 0.49 -0.2
296,213 + Atu3274 0.52 +0.1
296,213 + Atu3274 0.52 +0.3
296,412 + Atu3274 0.58 -0.4
296,442 - Atu3274 0.59 -1.3
296,469 - Atu3274 0.60 +3.1
296,469 - Atu3274 0.60 -0.1
296,638 - Atu3274 0.65 +0.0
296,651 - Atu3274 0.66 +0.1
296,657 + Atu3274 0.66 +0.2
296,679 + Atu3274 0.66 -0.2
296,714 - Atu3274 0.68 -0.1
296,767 - Atu3274 0.69 +0.2
296,913 + Atu3274 0.74 +0.1
296,913 + Atu3274 0.74 +0.1
296,948 - Atu3274 0.75 +0.6
296,990 - Atu3274 0.76 -0.0
297,015 - Atu3274 0.77 -0.9
297,025 - Atu3274 0.77 -0.5
297,052 + Atu3274 0.78 +0.8
297,070 - Atu3274 0.79 +0.3
297,070 - Atu3274 0.79 -0.0
297,130 + Atu3274 0.81 +0.1
297,340 - Atu3274 0.88 +0.0
297,383 - Atu3274 0.89 -0.4
297,494 - -0.8
297,517 + +0.1
297,517 + +1.3
297,597 + -0.4
297,640 - +1.1
297,671 + +0.2
297,676 + -0.3
297,801 - Atu3275 0.13 +0.4
297,832 - Atu3275 0.18 -0.3
297,880 + Atu3275 0.26 +0.8
297,901 + Atu3275 0.30 +0.1
297,906 + Atu3275 0.31 -0.4
297,914 - Atu3275 0.32 +0.3
297,919 - Atu3275 0.33 -0.7
297,956 - Atu3275 0.39 +0.1
298,005 - Atu3275 0.48 +1.7
298,005 - Atu3275 0.48 +0.5
298,082 - Atu3275 0.61 +0.3
298,174 - Atu3275 0.77 -0.2
298,242 - Atu3275 0.89 -0.5
298,337 + +0.1
298,404 + +0.3
298,406 + -0.1
298,424 - +0.1
298,454 - +0.6
298,504 - +0.2
298,529 + +1.5
298,626 + +0.1
298,665 + +0.2
298,698 - -0.5
298,724 - Atu3276 0.10 -0.1

Or see this region's nucleotide sequence