Strain Fitness in Agrobacterium fabrum C58 around Atu2552

Experiment: Chloramphenicol 6.25 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2551 and Atu2552 are separated by 149 nucleotidesAtu2552 and Atu2553 are separated by 120 nucleotidesAtu2553 and Atu2554 are separated by 251 nucleotides Atu2551: Atu2551 - RND multidrug efflux transporter, at 2,522,280 to 2,525,369 Atu2551 Atu2552: Atu2552 - nodulation protein T precursor, at 2,525,519 to 2,526,973 Atu2552 Atu2553: Atu2553 - elongation factor P, at 2,527,094 to 2,527,663 Atu2553 Atu2554: Atu2554 - lysyl-tRNA synthetase, at 2,527,915 to 2,528,979 Atu2554 Position (kb) 2525 2526 2527Strain fitness (log2 ratio) -2 -1 0 1at 2524.539 kb on + strand, within Atu2551at 2524.573 kb on - strand, within Atu2551at 2524.589 kb on - strand, within Atu2551at 2524.595 kb on + strand, within Atu2551at 2524.764 kb on + strand, within Atu2551at 2524.772 kb on + strand, within Atu2551at 2524.772 kb on - strand, within Atu2551at 2524.971 kb on - strand, within Atu2551at 2525.065 kb on - strandat 2525.073 kb on - strandat 2525.114 kb on + strandat 2525.131 kb on + strandat 2525.211 kb on - strandat 2525.215 kb on + strandat 2525.223 kb on - strandat 2525.297 kb on + strandat 2525.299 kb on + strandat 2526.975 kb on - strandat 2526.975 kb on - strandat 2527.069 kb on - strandat 2527.086 kb on - strandat 2527.716 kb on - strandat 2527.802 kb on + strandat 2527.934 kb on - strandat 2527.952 kb on + strandat 2527.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 6.25 ug/mL
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2,524,539 + Atu2551 0.73 -0.5
2,524,573 - Atu2551 0.74 -1.4
2,524,589 - Atu2551 0.75 +1.6
2,524,595 + Atu2551 0.75 -0.8
2,524,764 + Atu2551 0.80 -0.7
2,524,772 + Atu2551 0.81 -0.3
2,524,772 - Atu2551 0.81 -1.3
2,524,971 - Atu2551 0.87 +0.3
2,525,065 - -0.4
2,525,073 - -0.6
2,525,114 + -0.6
2,525,131 + -0.6
2,525,211 - -0.4
2,525,215 + -1.3
2,525,223 - -0.6
2,525,297 + -0.6
2,525,299 + -0.8
2,526,975 - -0.6
2,526,975 - -0.9
2,527,069 - +0.6
2,527,086 - +1.1
2,527,716 - -1.2
2,527,802 + -1.7
2,527,934 - -0.1
2,527,952 + +0.6
2,527,962 - -2.0

Or see this region's nucleotide sequence