Strain Fitness in Agrobacterium fabrum C58 around Atu1989

Experiment: Chloramphenicol 6.25 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 6.25 ug/mL
1,952,936	+				+0.7
1,952,955	+		Atu1988	0.12	-0.5
1,952,963	-		Atu1988	0.13	-0.0
1,952,998	-		Atu1988	0.16	+0.3
1,953,116	+		Atu1988	0.28	+1.4
1,953,160	-		Atu1988	0.32	-0.1
1,953,170	-		Atu1988	0.33	+3.1
1,953,170	-		Atu1988	0.33	-1.7
1,953,179	-		Atu1988	0.34	+1.1
1,953,183	-		Atu1988	0.35	-0.2
1,953,196	+		Atu1988	0.36	+1.1
1,953,227	-		Atu1988	0.39	+1.1
1,953,227	-		Atu1988	0.39	+0.1
1,953,238	-		Atu1988	0.40	-0.7
1,953,244	-		Atu1988	0.41	-0.3
1,953,310	-		Atu1988	0.48	+0.1
1,953,339	+		Atu1988	0.50	-1.2
1,953,398	+		Atu1988	0.56	-0.1
1,953,404	+		Atu1988	0.57	-0.1
1,953,421	+		Atu1988	0.59	+0.1
1,953,427	-		Atu1988	0.59	-0.6
1,953,427	-		Atu1988	0.59	+0.3
1,953,427	-		Atu1988	0.59	-0.4
1,953,463	+		Atu1988	0.63	-0.4
1,953,604	+		Atu1988	0.77	-1.3
1,953,619	+		Atu1988	0.79	-0.3
1,953,787	-				+0.4
1,953,796	-				-0.5
1,953,809	+				+0.4
1,953,951	+		Atu1989	0.23	+0.7
1,953,999	-		Atu1989	0.34	-1.5
1,954,059	-		Atu1989	0.47	-0.8
1,954,063	+		Atu1989	0.48	-0.5
1,954,158	+		Atu1989	0.69	-0.6
1,954,291	-				+0.7
1,954,348	-				+0.0
1,954,360	-				+0.0
1,954,469	-				+2.2
1,954,558	-		Atu1990	0.12	-2.3
1,954,589	-		Atu1990	0.13	-0.3
1,954,679	-		Atu1990	0.18	-0.2
1,954,697	+		Atu1990	0.18	+0.2
1,954,719	-		Atu1990	0.19	+0.4
1,954,827	+		Atu1990	0.24	+0.1
1,954,904	-		Atu1990	0.28	+0.2
1,954,909	-		Atu1990	0.28	-0.6
1,954,986	-		Atu1990	0.31	+0.5
1,954,999	-		Atu1990	0.32	+0.7
1,955,001	+		Atu1990	0.32	-0.5
1,955,033	-		Atu1990	0.34	-1.3
1,955,035	+		Atu1990	0.34	-0.0
1,955,035	+		Atu1990	0.34	-0.3
1,955,035	+		Atu1990	0.34	-0.2
1,955,043	-		Atu1990	0.34	-0.7
1,955,175	+		Atu1990	0.40	+0.0
1,955,183	-		Atu1990	0.40	+0.3
1,955,269	+		Atu1990	0.44	-0.2