Experiment: Chloramphenicol 6.25 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0978 and Atu0979 are separated by 9 nucleotides Atu0979 and Atu8143 are separated by 162 nucleotides
Atu0978: Atu0978 - two component response regulator, at 967,945 to 968,703
Atu0978
Atu0979: Atu0979 - two component sensor kinase, at 968,713 to 970,122
Atu0979
Atu8143: Atu8143 - hypothetical protein, at 970,285 to 971,145
Atu8143
Position (kb) 968
969
970
971 Strain fitness (log2 ratio) -2
-1
0
1
2 at 967.752 kb on - strand at 967.828 kb on + strand at 967.896 kb on - strand at 967.924 kb on - strand at 967.991 kb on + strand at 968.051 kb on + strand, within Atu0978 at 968.059 kb on + strand, within Atu0978 at 968.060 kb on - strand, within Atu0978 at 968.101 kb on + strand, within Atu0978 at 968.144 kb on - strand, within Atu0978 at 968.187 kb on + strand, within Atu0978 at 968.191 kb on - strand, within Atu0978 at 968.234 kb on + strand, within Atu0978 at 968.242 kb on - strand, within Atu0978 at 968.275 kb on + strand, within Atu0978 at 968.347 kb on + strand, within Atu0978 at 968.384 kb on - strand, within Atu0978 at 968.397 kb on + strand, within Atu0978 at 968.405 kb on - strand, within Atu0978 at 968.594 kb on - strand, within Atu0978 at 968.663 kb on - strand at 968.729 kb on - strand at 968.729 kb on - strand at 968.773 kb on - strand at 968.831 kb on - strand at 968.994 kb on - strand, within Atu0979 at 969.132 kb on + strand, within Atu0979 at 969.140 kb on - strand, within Atu0979 at 969.144 kb on + strand, within Atu0979 at 969.236 kb on + strand, within Atu0979 at 969.241 kb on + strand, within Atu0979 at 969.267 kb on + strand, within Atu0979 at 969.390 kb on + strand, within Atu0979 at 969.465 kb on + strand, within Atu0979 at 969.466 kb on - strand, within Atu0979 at 969.490 kb on - strand, within Atu0979 at 969.587 kb on + strand, within Atu0979 at 969.590 kb on + strand, within Atu0979 at 969.600 kb on + strand, within Atu0979 at 969.623 kb on - strand, within Atu0979 at 969.784 kb on + strand, within Atu0979 at 969.829 kb on + strand, within Atu0979 at 969.869 kb on - strand, within Atu0979 at 969.896 kb on - strand, within Atu0979 at 970.076 kb on + strand at 970.076 kb on + strand at 970.076 kb on + strand at 970.076 kb on + strand at 970.084 kb on - strand at 970.084 kb on - strand at 970.137 kb on - strand at 970.155 kb on - strand at 970.188 kb on + strand at 970.203 kb on + strand at 970.221 kb on - strand at 970.227 kb on + strand at 970.227 kb on + strand at 970.348 kb on + strand at 970.713 kb on + strand, within Atu8143 at 970.722 kb on + strand, within Atu8143 at 970.976 kb on - strand, within Atu8143 at 971.099 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 6.25 ug/mL remove 967,752 - +0.5 967,828 + -0.3 967,896 - -0.5 967,924 - +0.3 967,991 + +1.6 968,051 + Atu0978 0.14 -0.2 968,059 + Atu0978 0.15 -1.0 968,060 - Atu0978 0.15 -1.0 968,101 + Atu0978 0.21 +0.5 968,144 - Atu0978 0.26 +0.5 968,187 + Atu0978 0.32 +0.6 968,191 - Atu0978 0.32 +0.2 968,234 + Atu0978 0.38 -1.0 968,242 - Atu0978 0.39 +0.8 968,275 + Atu0978 0.43 +0.5 968,347 + Atu0978 0.53 +0.4 968,384 - Atu0978 0.58 -2.3 968,397 + Atu0978 0.60 -0.2 968,405 - Atu0978 0.61 -0.8 968,594 - Atu0978 0.86 +0.0 968,663 - +1.0 968,729 - +0.4 968,729 - -1.7 968,773 - +1.3 968,831 - -1.8 968,994 - Atu0979 0.20 -0.5 969,132 + Atu0979 0.30 -0.6 969,140 - Atu0979 0.30 -0.5 969,144 + Atu0979 0.31 -1.0 969,236 + Atu0979 0.37 +1.0 969,241 + Atu0979 0.37 +2.0 969,267 + Atu0979 0.39 +0.5 969,390 + Atu0979 0.48 +1.0 969,465 + Atu0979 0.53 +1.0 969,466 - Atu0979 0.53 -1.3 969,490 - Atu0979 0.55 -0.5 969,587 + Atu0979 0.62 +0.0 969,590 + Atu0979 0.62 +0.2 969,600 + Atu0979 0.63 +0.7 969,623 - Atu0979 0.65 -0.3 969,784 + Atu0979 0.76 -0.3 969,829 + Atu0979 0.79 -0.9 969,869 - Atu0979 0.82 +1.0 969,896 - Atu0979 0.84 +0.0 970,076 + -1.0 970,076 + -0.1 970,076 + +0.8 970,076 + -0.5 970,084 - +0.0 970,084 - -0.9 970,137 - -0.4 970,155 - -0.6 970,188 + -0.0 970,203 + -0.1 970,221 - -0.3 970,227 + +0.8 970,227 + -1.0 970,348 + -0.7 970,713 + Atu8143 0.50 -0.8 970,722 + Atu8143 0.51 -0.4 970,976 - Atu8143 0.80 +1.0 971,099 - +2.0
Or see this region's nucleotide sequence