Strain Fitness in Agrobacterium fabrum C58 around Atu1675

Experiment: Hygromycin B 25 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Hygromycin B 25 ug/mL
1,661,307	-				+1.1
1,661,397	+				-0.6
1,661,397	+				-0.3
1,661,397	+				-0.3
1,661,430	+		Atu1674	0.11	+0.5
1,661,546	-		Atu1674	0.28	+1.7
1,661,557	+		Atu1674	0.29	-0.4
1,661,739	+		Atu1674	0.56	+0.1
1,661,740	-		Atu1674	0.56	-0.4
1,661,744	+		Atu1674	0.57	-1.6
1,661,745	-		Atu1674	0.57	-0.3
1,661,747	-		Atu1674	0.57	-0.7
1,661,747	-		Atu1674	0.57	-0.1
1,661,747	-		Atu1674	0.57	-0.5
1,661,749	+		Atu1674	0.57	-0.1
1,661,758	-		Atu1674	0.59	+0.6
1,661,843	+		Atu1674	0.71	+0.2
1,662,045	+				+0.1
1,662,064	-				+0.7
1,662,069	-				-0.5
1,662,092	+				-0.5
1,662,095	+				+0.1
1,662,100	-				+0.4
1,662,100	-				+0.1
1,662,100	-				-0.3
1,662,103	-				-0.2
1,662,103	-				+2.9
1,662,105	-				+0.3
1,662,258	-				-0.8
1,662,382	+		Atu1675	0.12	+0.0
1,662,398	+		Atu1675	0.14	+0.2
1,662,460	+		Atu1675	0.19	-1.3
1,662,466	+		Atu1675	0.20	-0.2
1,662,468	-		Atu1675	0.20	-0.7
1,662,468	-		Atu1675	0.20	-0.7
1,662,468	-		Atu1675	0.20	-0.1
1,662,486	-		Atu1675	0.22	-0.0
1,662,516	-		Atu1675	0.24	-0.6
1,662,529	-		Atu1675	0.26	+1.0
1,662,529	-		Atu1675	0.26	-1.2
1,662,583	-		Atu1675	0.31	+0.1
1,662,626	+		Atu1675	0.34	+1.4
1,662,656	-		Atu1675	0.37	+1.5
1,662,701	+		Atu1675	0.41	-0.9
1,662,701	+		Atu1675	0.41	-0.6
1,662,701	+		Atu1675	0.41	-0.0
1,662,829	+		Atu1675	0.53	+1.5
1,662,846	-		Atu1675	0.54	-0.7
1,662,958	-		Atu1675	0.65	-0.0
1,663,030	-		Atu1675	0.71	-1.1
1,663,086	+		Atu1675	0.76	+0.1
1,663,086	+		Atu1675	0.76	-0.1
1,663,109	-		Atu1675	0.78	+0.2
1,663,156	+		Atu1675	0.83	+0.4
1,663,164	-		Atu1675	0.83	-0.1
1,663,207	+		Atu1675	0.87	+0.2
1,663,215	-		Atu1675	0.88	+0.8
1,663,254	-				-0.7
1,663,273	+				-0.3
1,663,479	-		Atu1676	0.12	-0.2
1,663,527	-		Atu1676	0.17	-2.1
1,663,748	+		Atu1676	0.38	+0.4
1,663,748	+		Atu1676	0.38	+0.3
1,663,770	+		Atu1676	0.41	-0.4
1,664,206	+		Atu1676	0.83	+1.4
1,664,214	-		Atu1676	0.83	-0.3
1,664,306	-				+0.1