Strain Fitness in Agrobacterium fabrum C58 around Atu8016

Experiment: Hygromycin B 12.5 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1339 and Atu8016 are separated by 259 nucleotidesAtu8016 and Atu1340 are separated by 245 nucleotides Atu1339: Atu1339 - ribonuclease E, at 1,323,801 to 1,326,734 Atu1339 Atu8016: Atu8016 - hypothetical protein, at 1,326,994 to 1,327,134 Atu8016 Atu1340: Atu1340 - N-acetylmuramoyl-L-alanine amidase, at 1,327,380 to 1,328,639 Atu1340 Position (kb) 1326 1327 1328Strain fitness (log2 ratio) -1 0 1at 1327.257 kb on + strandat 1327.280 kb on + strandat 1327.288 kb on + strandat 1327.289 kb on - strandat 1327.329 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hygromycin B 12.5 ug/mL
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1,327,257 + -0.3
1,327,280 + +0.9
1,327,288 + -0.2
1,327,289 - -0.8
1,327,329 + +0.6

Or see this region's nucleotide sequence