Experiment: Hygromycin B 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3546 and Atu3547 are separated by 69 nucleotides Atu3547 and Atu3548 are separated by 144 nucleotides
Atu3546: Atu3546 - hypothetical protein, at 594,873 to 596,891
Atu3546
Atu3547: Atu3547 - hypothetical protein, at 596,961 to 597,617
Atu3547
Atu3548: Atu3548 - glycosyltransferase, at 597,762 to 598,988
Atu3548
Position (kb) 596
597
598 Strain fitness (log2 ratio) -2
-1
0
1 at 596.027 kb on - strand, within Atu3546 at 596.302 kb on + strand, within Atu3546 at 596.302 kb on + strand, within Atu3546 at 596.302 kb on + strand, within Atu3546 at 596.310 kb on - strand, within Atu3546 at 596.386 kb on + strand, within Atu3546 at 596.392 kb on - strand, within Atu3546 at 596.392 kb on - strand, within Atu3546 at 596.392 kb on - strand, within Atu3546 at 596.415 kb on - strand, within Atu3546 at 596.510 kb on + strand, within Atu3546 at 596.537 kb on - strand, within Atu3546 at 596.557 kb on - strand, within Atu3546 at 596.618 kb on + strand, within Atu3546 at 596.625 kb on + strand, within Atu3546 at 596.626 kb on - strand, within Atu3546 at 596.626 kb on - strand, within Atu3546 at 596.673 kb on - strand, within Atu3546 at 596.690 kb on + strand at 596.699 kb on + strand at 596.736 kb on - strand at 596.944 kb on - strand at 596.993 kb on - strand at 597.000 kb on - strand at 597.023 kb on + strand at 597.048 kb on + strand, within Atu3547 at 597.107 kb on - strand, within Atu3547 at 597.152 kb on - strand, within Atu3547 at 597.158 kb on + strand, within Atu3547 at 597.169 kb on + strand, within Atu3547 at 597.169 kb on + strand, within Atu3547 at 597.169 kb on + strand, within Atu3547 at 597.169 kb on + strand, within Atu3547 at 597.177 kb on - strand, within Atu3547 at 597.219 kb on + strand, within Atu3547 at 597.353 kb on + strand, within Atu3547 at 597.381 kb on + strand, within Atu3547 at 597.382 kb on + strand, within Atu3547 at 597.389 kb on - strand, within Atu3547 at 597.475 kb on - strand, within Atu3547 at 597.487 kb on - strand, within Atu3547 at 597.540 kb on + strand, within Atu3547 at 597.547 kb on + strand, within Atu3547 at 597.611 kb on + strand at 597.909 kb on - strand, within Atu3548 at 597.974 kb on - strand, within Atu3548 at 598.077 kb on + strand, within Atu3548 at 598.085 kb on - strand, within Atu3548 at 598.166 kb on - strand, within Atu3548 at 598.345 kb on + strand, within Atu3548 at 598.413 kb on + strand, within Atu3548 at 598.420 kb on + strand, within Atu3548 at 598.487 kb on - strand, within Atu3548 at 598.494 kb on - strand, within Atu3548 at 598.548 kb on + strand, within Atu3548 at 598.616 kb on - strand, within Atu3548
Per-strain Table
Position Strand Gene LocusTag Fraction Hygromycin B 12.5 ug/mL remove 596,027 - Atu3546 0.57 -0.0 596,302 + Atu3546 0.71 +1.3 596,302 + Atu3546 0.71 +0.1 596,302 + Atu3546 0.71 -0.4 596,310 - Atu3546 0.71 +0.8 596,386 + Atu3546 0.75 -0.2 596,392 - Atu3546 0.75 -0.6 596,392 - Atu3546 0.75 -1.0 596,392 - Atu3546 0.75 -0.2 596,415 - Atu3546 0.76 -0.9 596,510 + Atu3546 0.81 +0.2 596,537 - Atu3546 0.82 +0.1 596,557 - Atu3546 0.83 -0.0 596,618 + Atu3546 0.86 +0.5 596,625 + Atu3546 0.87 -0.5 596,626 - Atu3546 0.87 +1.3 596,626 - Atu3546 0.87 -0.4 596,673 - Atu3546 0.89 -1.9 596,690 + +0.3 596,699 + +0.0 596,736 - +0.8 596,944 - -0.3 596,993 - +0.1 597,000 - -0.2 597,023 + -1.3 597,048 + Atu3547 0.13 -1.0 597,107 - Atu3547 0.22 +0.7 597,152 - Atu3547 0.29 +0.4 597,158 + Atu3547 0.30 -0.1 597,169 + Atu3547 0.32 -0.1 597,169 + Atu3547 0.32 +0.2 597,169 + Atu3547 0.32 -0.3 597,169 + Atu3547 0.32 +0.1 597,177 - Atu3547 0.33 +0.3 597,219 + Atu3547 0.39 +0.2 597,353 + Atu3547 0.60 +1.1 597,381 + Atu3547 0.64 +1.5 597,382 + Atu3547 0.64 -0.0 597,389 - Atu3547 0.65 +0.2 597,475 - Atu3547 0.78 -0.5 597,487 - Atu3547 0.80 -0.1 597,540 + Atu3547 0.88 +0.6 597,547 + Atu3547 0.89 +0.9 597,611 + +0.5 597,909 - Atu3548 0.12 +0.1 597,974 - Atu3548 0.17 -0.3 598,077 + Atu3548 0.26 -0.1 598,085 - Atu3548 0.26 +0.3 598,166 - Atu3548 0.33 +1.1 598,345 + Atu3548 0.48 +0.5 598,413 + Atu3548 0.53 -0.3 598,420 + Atu3548 0.54 +0.1 598,487 - Atu3548 0.59 +0.4 598,494 - Atu3548 0.60 +0.7 598,548 + Atu3548 0.64 -0.1 598,616 - Atu3548 0.70 -0.7
Or see this region's nucleotide sequence