Experiment: Hygromycin B 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3536 and Atu3537 are separated by 3 nucleotides Atu3537 and Atu3538 are separated by 135 nucleotides Atu3538 and Atu3539 are separated by 30 nucleotides
Atu3536: Atu3536 - ABC transporter permease, at 585,679 to 587,220
Atu3536
Atu3537: Atu3537 - hypothetical protein, at 587,224 to 587,433
Atu3537
Atu3538: Atu3538 - hypothetical protein, at 587,569 to 588,084
Atu3538
Atu3539: Atu3539 - hypothetical protein, at 588,115 to 588,672
Atu3539
Position (kb) 587
588 Strain fitness (log2 ratio) -2
-1
0
1
2 at 586.367 kb on + strand, within Atu3536 at 586.375 kb on - strand, within Atu3536 at 586.376 kb on - strand, within Atu3536 at 586.400 kb on - strand, within Atu3536 at 586.441 kb on + strand, within Atu3536 at 586.459 kb on - strand, within Atu3536 at 586.476 kb on - strand, within Atu3536 at 586.615 kb on - strand, within Atu3536 at 586.634 kb on + strand, within Atu3536 at 586.673 kb on + strand, within Atu3536 at 586.701 kb on + strand, within Atu3536 at 586.735 kb on + strand, within Atu3536 at 586.735 kb on + strand, within Atu3536 at 586.735 kb on + strand, within Atu3536 at 586.761 kb on - strand, within Atu3536 at 586.853 kb on + strand, within Atu3536 at 586.853 kb on + strand, within Atu3536 at 586.853 kb on - strand, within Atu3536 at 586.968 kb on - strand, within Atu3536 at 586.983 kb on + strand, within Atu3536 at 587.101 kb on + strand at 587.101 kb on + strand at 587.109 kb on - strand at 587.109 kb on - strand at 587.113 kb on + strand at 587.113 kb on + strand at 587.114 kb on - strand at 587.121 kb on - strand at 587.121 kb on - strand at 587.174 kb on - strand at 587.183 kb on + strand at 587.183 kb on + strand at 587.183 kb on + strand at 587.191 kb on - strand at 587.202 kb on - strand at 587.215 kb on + strand at 587.220 kb on + strand at 587.221 kb on - strand at 587.287 kb on - strand, within Atu3537 at 587.461 kb on - strand at 588.104 kb on + strand at 588.118 kb on + strand at 588.191 kb on + strand, within Atu3539 at 588.361 kb on + strand, within Atu3539 at 588.380 kb on + strand, within Atu3539 at 588.380 kb on + strand, within Atu3539
Per-strain Table
Position Strand Gene LocusTag Fraction Hygromycin B 12.5 ug/mL remove 586,367 + Atu3536 0.45 +0.3 586,375 - Atu3536 0.45 -0.5 586,376 - Atu3536 0.45 +0.1 586,400 - Atu3536 0.47 -0.3 586,441 + Atu3536 0.49 -0.0 586,459 - Atu3536 0.51 -0.0 586,476 - Atu3536 0.52 +0.1 586,615 - Atu3536 0.61 -0.0 586,634 + Atu3536 0.62 -0.0 586,673 + Atu3536 0.64 +0.9 586,701 + Atu3536 0.66 -0.0 586,735 + Atu3536 0.68 +0.8 586,735 + Atu3536 0.68 +0.1 586,735 + Atu3536 0.68 +1.1 586,761 - Atu3536 0.70 +0.3 586,853 + Atu3536 0.76 +0.5 586,853 + Atu3536 0.76 -0.3 586,853 - Atu3536 0.76 -0.5 586,968 - Atu3536 0.84 -0.2 586,983 + Atu3536 0.85 -0.7 587,101 + +0.5 587,101 + -1.9 587,109 - -0.2 587,109 - -0.3 587,113 + -0.0 587,113 + -0.2 587,114 - -0.3 587,121 - +0.1 587,121 - -0.1 587,174 - +1.3 587,183 + +1.9 587,183 + +0.1 587,183 + -0.0 587,191 - -0.3 587,202 - -0.2 587,215 + -0.1 587,220 + -0.3 587,221 - -0.1 587,287 - Atu3537 0.30 +0.4 587,461 - +0.0 588,104 + +0.2 588,118 + +0.5 588,191 + Atu3539 0.14 +1.3 588,361 + Atu3539 0.44 +0.2 588,380 + Atu3539 0.47 -0.2 588,380 + Atu3539 0.47 -1.4
Or see this region's nucleotide sequence