Experiment: Hygromycin B 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3431 and Atu3432 overlap by 4 nucleotides Atu3432 and Atu3433 are separated by 69 nucleotides
Atu3431: Atu3431 - acyl-CoA dehydrogenase, at 476,602 to 477,780
Atu3431
Atu3432: Atu3432 - desulfurizing enzyme, at 477,777 to 478,808
Atu3432
Atu3433: Atu3433 - oligopeptide ABC transporter substrate-binding protein, at 478,878 to 480,485
Atu3433
Position (kb) 477
478
479 Strain fitness (log2 ratio) -1
0
1 at 476.813 kb on - strand, within Atu3431 at 476.839 kb on + strand, within Atu3431 at 476.895 kb on + strand, within Atu3431 at 476.903 kb on - strand, within Atu3431 at 476.919 kb on + strand, within Atu3431 at 476.924 kb on + strand, within Atu3431 at 476.927 kb on - strand, within Atu3431 at 476.927 kb on - strand, within Atu3431 at 476.937 kb on + strand, within Atu3431 at 476.944 kb on + strand, within Atu3431 at 476.952 kb on + strand, within Atu3431 at 476.997 kb on + strand, within Atu3431 at 476.997 kb on + strand, within Atu3431 at 477.005 kb on - strand, within Atu3431 at 477.005 kb on - strand, within Atu3431 at 477.019 kb on + strand, within Atu3431 at 477.408 kb on - strand, within Atu3431 at 477.431 kb on + strand, within Atu3431 at 477.440 kb on - strand, within Atu3431 at 477.491 kb on + strand, within Atu3431 at 477.491 kb on + strand, within Atu3431 at 477.499 kb on - strand, within Atu3431 at 477.511 kb on - strand, within Atu3431 at 477.583 kb on + strand, within Atu3431 at 477.599 kb on + strand, within Atu3431 at 477.736 kb on - strand at 477.751 kb on + strand at 477.920 kb on + strand, within Atu3432 at 478.085 kb on + strand, within Atu3432 at 478.191 kb on - strand, within Atu3432 at 478.246 kb on + strand, within Atu3432 at 478.279 kb on - strand, within Atu3432 at 478.352 kb on - strand, within Atu3432 at 478.373 kb on + strand, within Atu3432 at 478.381 kb on - strand, within Atu3432 at 478.463 kb on - strand, within Atu3432 at 478.517 kb on + strand, within Atu3432 at 478.555 kb on - strand, within Atu3432 at 478.660 kb on + strand, within Atu3432 at 478.717 kb on - strand at 478.734 kb on + strand at 478.764 kb on - strand at 478.796 kb on + strand at 478.806 kb on + strand at 478.818 kb on - strand at 478.968 kb on + strand at 479.055 kb on - strand, within Atu3433 at 479.077 kb on + strand, within Atu3433 at 479.085 kb on - strand, within Atu3433 at 479.106 kb on + strand, within Atu3433 at 479.111 kb on + strand, within Atu3433 at 479.293 kb on - strand, within Atu3433 at 479.316 kb on + strand, within Atu3433 at 479.321 kb on + strand, within Atu3433 at 479.321 kb on + strand, within Atu3433 at 479.435 kb on + strand, within Atu3433 at 479.435 kb on + strand, within Atu3433 at 479.475 kb on - strand, within Atu3433 at 479.593 kb on + strand, within Atu3433 at 479.694 kb on - strand, within Atu3433 at 479.713 kb on - strand, within Atu3433
Per-strain Table
Position Strand Gene LocusTag Fraction Hygromycin B 12.5 ug/mL remove 476,813 - Atu3431 0.18 +0.1 476,839 + Atu3431 0.20 +0.2 476,895 + Atu3431 0.25 -0.1 476,903 - Atu3431 0.26 -0.9 476,919 + Atu3431 0.27 -0.1 476,924 + Atu3431 0.27 -0.7 476,927 - Atu3431 0.28 -0.2 476,927 - Atu3431 0.28 -0.1 476,937 + Atu3431 0.28 +0.3 476,944 + Atu3431 0.29 -0.4 476,952 + Atu3431 0.30 -0.5 476,997 + Atu3431 0.34 -0.3 476,997 + Atu3431 0.34 -0.2 477,005 - Atu3431 0.34 -1.0 477,005 - Atu3431 0.34 -0.3 477,019 + Atu3431 0.35 -0.2 477,408 - Atu3431 0.68 -0.0 477,431 + Atu3431 0.70 -0.1 477,440 - Atu3431 0.71 -0.3 477,491 + Atu3431 0.75 -0.7 477,491 + Atu3431 0.75 -0.3 477,499 - Atu3431 0.76 +0.5 477,511 - Atu3431 0.77 -0.3 477,583 + Atu3431 0.83 -0.2 477,599 + Atu3431 0.85 -0.2 477,736 - -0.1 477,751 + -0.4 477,920 + Atu3432 0.14 -0.2 478,085 + Atu3432 0.30 +0.1 478,191 - Atu3432 0.40 +0.4 478,246 + Atu3432 0.45 +1.0 478,279 - Atu3432 0.49 +0.8 478,352 - Atu3432 0.56 +0.3 478,373 + Atu3432 0.58 +1.7 478,381 - Atu3432 0.59 +0.4 478,463 - Atu3432 0.66 +0.2 478,517 + Atu3432 0.72 +0.3 478,555 - Atu3432 0.75 +0.3 478,660 + Atu3432 0.86 +1.3 478,717 - +0.7 478,734 + -0.4 478,764 - -0.3 478,796 + -0.9 478,806 + +0.5 478,818 - -0.5 478,968 + +0.3 479,055 - Atu3433 0.11 -0.3 479,077 + Atu3433 0.12 +0.8 479,085 - Atu3433 0.13 +0.2 479,106 + Atu3433 0.14 +0.3 479,111 + Atu3433 0.14 +0.0 479,293 - Atu3433 0.26 -0.9 479,316 + Atu3433 0.27 +0.0 479,321 + Atu3433 0.28 -0.4 479,321 + Atu3433 0.28 -0.4 479,435 + Atu3433 0.35 -0.6 479,435 + Atu3433 0.35 -0.1 479,475 - Atu3433 0.37 +0.1 479,593 + Atu3433 0.44 +0.4 479,694 - Atu3433 0.51 +0.1 479,713 - Atu3433 0.52 +0.5
Or see this region's nucleotide sequence