Strain Fitness in Agrobacterium fabrum C58 around Atu1689

Experiment: Hygromycin B 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Hygromycin B 12.5 ug/mL
1,672,527	+		Atu1687	0.87	-0.3
1,672,527	+		Atu1687	0.87	-0.0
1,672,535	-		Atu1687	0.88	-0.7
1,672,562	-				+0.7
1,672,732	+				+0.7
1,672,732	+				-0.1
1,672,791	+		Atu1688	0.14	+2.4
1,672,860	-		Atu1688	0.23	-0.4
1,672,874	+		Atu1688	0.25	-0.1
1,672,874	-		Atu1688	0.25	+0.4
1,672,949	+		Atu1688	0.34	-1.0
1,673,076	-		Atu1688	0.49	+0.1
1,673,096	+		Atu1688	0.52	+0.3
1,673,101	+		Atu1688	0.52	-0.8
1,673,247	+		Atu1688	0.70	+0.4
1,673,270	-		Atu1688	0.73	+2.2
1,673,411	-				-2.0
1,673,425	+				+0.1
1,673,760	-		Atu1689	0.54	-1.0
1,673,775	-		Atu1689	0.57	-0.5
1,673,899	-		Atu1689	0.82	-1.0
1,673,899	-		Atu1689	0.82	-0.1
1,674,012	-				+0.1
1,674,037	-				+0.6
1,674,126	-		Atu1690	0.11	-0.0
1,674,155	+		Atu1690	0.14	+0.4
1,674,157	+		Atu1690	0.14	+1.4
1,674,165	-		Atu1690	0.15	-1.0
1,674,247	+		Atu1690	0.21	-0.3
1,674,288	+		Atu1690	0.25	+0.2
1,674,420	+		Atu1690	0.35	-0.6
1,674,569	+		Atu1690	0.48	+0.4
1,674,634	+		Atu1690	0.53	+0.1
1,674,642	-		Atu1690	0.54	-0.0
1,674,715	+		Atu1690	0.60	-1.3
1,674,871	+		Atu1690	0.72	+1.4