Strain Fitness in Agrobacterium fabrum C58 around Atu0679
Experiment: Hygromycin B 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Hygromycin B 12.5 ug/mL |
---|---|---|---|---|---|
remove | |||||
672,987 | - | Atu0678 | 0.16 | -0.3 | |
673,348 | + | Atu0678 | 0.48 | -0.3 | |
673,375 | - | Atu0678 | 0.50 | -0.1 | |
673,417 | + | Atu0678 | 0.54 | +1.4 | |
673,548 | + | Atu0678 | 0.66 | +0.4 | |
673,574 | + | Atu0678 | 0.68 | -0.4 | |
673,582 | - | Atu0678 | 0.69 | -0.4 | |
673,593 | + | Atu0678 | 0.70 | +0.7 | |
673,614 | - | Atu0678 | 0.72 | -0.3 | |
673,697 | - | Atu0678 | 0.79 | +1.2 | |
673,802 | - | Atu0678 | 0.88 | -1.6 | |
673,901 | + | -1.0 | |||
673,929 | + | -0.1 | |||
673,993 | - | -1.2 | |||
674,162 | + | Atu0679 | 0.33 | +0.3 | |
674,162 | + | Atu0679 | 0.33 | -0.8 | |
674,170 | - | Atu0679 | 0.34 | +0.4 | |
674,255 | + | Atu0679 | 0.47 | -1.4 | |
674,286 | - | Atu0679 | 0.51 | -0.3 | |
674,387 | - | Atu0679 | 0.66 | -0.8 | |
674,407 | - | Atu0679 | 0.69 | +0.2 | |
674,428 | + | Atu0679 | 0.72 | -0.6 | |
674,473 | - | Atu0679 | 0.78 | -1.4 | |
674,686 | + | +0.4 | |||
674,759 | + | Atu0680 | 0.14 | +0.6 | |
674,767 | - | Atu0680 | 0.16 | +0.1 | |
674,767 | - | Atu0680 | 0.16 | -1.2 | |
674,831 | - | Atu0680 | 0.29 | -0.6 | |
674,852 | + | Atu0680 | 0.33 | -0.1 | |
674,970 | - | Atu0680 | 0.57 | +2.0 | |
674,975 | - | Atu0680 | 0.58 | -0.4 | |
675,182 | - | +0.0 | |||
675,185 | + | +0.7 | |||
675,456 | + | Atu0681 | 0.38 | +0.4 | |
675,464 | - | Atu0681 | 0.40 | -0.4 | |
675,493 | + | Atu0681 | 0.47 | +0.5 | |
675,502 | + | Atu0681 | 0.49 | +0.3 | |
675,522 | - | Atu0681 | 0.53 | +0.3 | |
675,527 | - | Atu0681 | 0.54 | +0.5 |
Or see this region's nucleotide sequence