Strain Fitness in Agrobacterium fabrum C58 around Atu0587

Experiment: Hygromycin B 12.5 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0585 and Atu8132 overlap by 1 nucleotidesAtu8132 and Atu0587 are separated by 183 nucleotidesAtu0587 and Atu0588 are separated by 127 nucleotides Atu0585: Atu0585 - hypothetical protein, at 568,556 to 568,924 Atu0585 Atu8132: Atu8132 - hypothetical protein, at 568,924 to 569,457 Atu8132 Atu0587: Atu0587 - teichoic acid biosynthesis protein, at 569,641 to 570,315 Atu0587 Atu0588: Atu0588 - hypothetical protein, at 570,443 to 572,206 Atu0588 Position (kb) 569 570 571Strain fitness (log2 ratio) -1 0 1 2at 568.667 kb on - strand, within Atu0585at 568.762 kb on + strand, within Atu0585at 568.762 kb on + strand, within Atu0585at 568.814 kb on + strand, within Atu0585at 568.895 kb on + strandat 568.898 kb on + strandat 568.976 kb on + strandat 568.980 kb on + strand, within Atu8132at 568.986 kb on - strand, within Atu8132at 569.060 kb on - strand, within Atu8132at 569.142 kb on + strand, within Atu8132at 569.142 kb on + strand, within Atu8132at 569.150 kb on - strand, within Atu8132at 569.186 kb on - strand, within Atu8132at 569.186 kb on - strand, within Atu8132at 569.254 kb on + strand, within Atu8132at 569.268 kb on - strand, within Atu8132at 569.626 kb on - strandat 569.695 kb on - strandat 569.701 kb on - strandat 569.739 kb on - strand, within Atu0587at 569.748 kb on + strand, within Atu0587at 569.773 kb on + strand, within Atu0587at 569.782 kb on + strand, within Atu0587at 569.817 kb on + strand, within Atu0587at 569.820 kb on - strand, within Atu0587at 569.825 kb on - strand, within Atu0587at 569.865 kb on + strand, within Atu0587at 569.958 kb on + strand, within Atu0587at 569.966 kb on - strand, within Atu0587at 570.027 kb on - strand, within Atu0587at 570.101 kb on - strand, within Atu0587at 570.110 kb on + strand, within Atu0587at 570.147 kb on + strand, within Atu0587at 570.187 kb on - strand, within Atu0587at 570.198 kb on + strand, within Atu0587at 570.206 kb on - strand, within Atu0587at 570.265 kb on + strandat 570.348 kb on + strandat 570.398 kb on - strandat 570.445 kb on - strandat 570.446 kb on + strandat 570.637 kb on + strand, within Atu0588at 570.642 kb on + strand, within Atu0588at 570.656 kb on + strand, within Atu0588at 570.664 kb on - strand, within Atu0588at 570.664 kb on - strand, within Atu0588at 570.674 kb on - strand, within Atu0588at 570.800 kb on - strand, within Atu0588at 570.800 kb on - strand, within Atu0588at 571.008 kb on + strand, within Atu0588at 571.030 kb on + strand, within Atu0588at 571.080 kb on + strand, within Atu0588at 571.114 kb on - strand, within Atu0588at 571.118 kb on + strand, within Atu0588at 571.148 kb on + strand, within Atu0588at 571.156 kb on - strand, within Atu0588at 571.199 kb on + strand, within Atu0588

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Per-strain Table

Position Strand Gene LocusTag Fraction Hygromycin B 12.5 ug/mL
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568,667 - Atu0585 0.30 -0.0
568,762 + Atu0585 0.56 -0.3
568,762 + Atu0585 0.56 +2.2
568,814 + Atu0585 0.70 +0.2
568,895 + +0.5
568,898 + -0.1
568,976 + +0.8
568,980 + Atu8132 0.10 +0.4
568,986 - Atu8132 0.12 -0.2
569,060 - Atu8132 0.25 +0.6
569,142 + Atu8132 0.41 +0.8
569,142 + Atu8132 0.41 -0.2
569,150 - Atu8132 0.42 -0.3
569,186 - Atu8132 0.49 -0.2
569,186 - Atu8132 0.49 -0.4
569,254 + Atu8132 0.62 -0.4
569,268 - Atu8132 0.64 +0.0
569,626 - -0.9
569,695 - +1.2
569,701 - -0.4
569,739 - Atu0587 0.15 -0.0
569,748 + Atu0587 0.16 -0.2
569,773 + Atu0587 0.20 -0.4
569,782 + Atu0587 0.21 -1.0
569,817 + Atu0587 0.26 +0.7
569,820 - Atu0587 0.27 -1.0
569,825 - Atu0587 0.27 -0.0
569,865 + Atu0587 0.33 +1.4
569,958 + Atu0587 0.47 -1.7
569,966 - Atu0587 0.48 -1.2
570,027 - Atu0587 0.57 +0.4
570,101 - Atu0587 0.68 +0.5
570,110 + Atu0587 0.69 -1.2
570,147 + Atu0587 0.75 -1.3
570,187 - Atu0587 0.81 -0.2
570,198 + Atu0587 0.83 -0.6
570,206 - Atu0587 0.84 +0.4
570,265 + -1.2
570,348 + +0.6
570,398 - +0.2
570,445 - +0.8
570,446 + -0.3
570,637 + Atu0588 0.11 +0.4
570,642 + Atu0588 0.11 +0.4
570,656 + Atu0588 0.12 +0.1
570,664 - Atu0588 0.13 -0.6
570,664 - Atu0588 0.13 -0.3
570,674 - Atu0588 0.13 -0.2
570,800 - Atu0588 0.20 +0.6
570,800 - Atu0588 0.20 -1.2
571,008 + Atu0588 0.32 -1.3
571,030 + Atu0588 0.33 -0.4
571,080 + Atu0588 0.36 -0.6
571,114 - Atu0588 0.38 +0.1
571,118 + Atu0588 0.38 -0.1
571,148 + Atu0588 0.40 +0.1
571,156 - Atu0588 0.40 -0.6
571,199 + Atu0588 0.43 -1.1

Or see this region's nucleotide sequence